PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g039240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 794aa    MW: 91116.8 Da    PI: 5.8902
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g039240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-14407495498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      l +  ++++  +v+p ++ ++   +   +k+++l+ + g sW+v    + +++++ ++kGW +F ++n L++gDf++F ++g++ f   v+++r
  Csa17g039240.1 407 LLQTLPHNNTVSIVIPIPYYDQL--PRLLPKKVILQGPGGCSWNVAT--EIRGDEVHFAKGWPKFIEDNTLNDGDFLTFVYNGDDIF--EVSIYR 495
                     55566666666789999999666..4558899***************..99999999*************************99988..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501819.365153IPR001810F-box domain
SuperFamilySSF813832.35E-9264IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.3E-15244IPR032675Leucine-rich repeat domain, L domain-like
PfamPF006462.0E-4340IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.3E-15105340IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520588.16E-10114229IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520588.16E-10264362IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5086314.607404497IPR003340B3 DNA binding domain
PfamPF023628.9E-12405495IPR003340B3 DNA binding domain
SMARTSM010191.9E-9407497IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-18414499IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-16417499IPR015300DNA-binding pseudobarrel domain
CDDcd100177.29E-11419495No hitNo description
SMARTSM010190.71699791IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MDLISSLPDA ILQHILFFVP TQLAITTSVL SRRWRHVWSD TPSLSFDDSY RPLAHAAWIN  60
KTLDRYTALK MTKFHLKSRM YHTVADIDRW MEFVMSRNVE NLSLCIGLSR DYFYYYQIPD  120
FFYINSSIKQ LSFELPHSRM FPLCSVSWTS LKELSLYNCS LSNETVAKIL CGCPILESLK  180
LDHCPHLRVL DLSKSLGVRT LEIACNRFLS GSLQIVAPHV HSLRLWYNYQ LACALVDVSS  240
LTEAKVDVSC YSSVRETING YDLFQFLREM LEKLQNAEKL TFGCTIIQLL SVAEVRGITF  300
PMLKIKSLTL ETQIFQCVIP VIERLLQNSP NLKTVTVHAN TKNCRNDFVG VGGWRSKDEP  360
SWNRSRWELE SKHVASFVEL VLKNAKALDK IVLQLYGDYP RFKFEELLQT LPHNNTVSIV  420
IPIPYYDQLP RLLPKKVILQ GPGGCSWNVA TEIRGDEVHF AKGWPKFIED NTLNDGDFLT  480
FVYNGDDIFE VSIYRSDGCK ETSEVFEVEE DEGDSVCSLS SDDTDTRSKP EMENPMPQGR  540
DKGKSKVEVV DDSDEEEDSV YSESSEETET ESDSDSEFKI GKTTPKRKNK GKKKEEAVPV  600
ESSEEDSDSD GDSDSDYIEA FGQLDVEDES NSEDSSYAPE EEDTAASTTC VKAKVPNLKR  660
TEAAKKRKKE MLLSLEIFTV EPKIKNPERY LDDPKNIHFE TNVKNRLYEL LVHAQLVKDY  720
CLRFGDYVDY IDRFGKLRAK TAKWKDQRVC IKRWMRICKR HGLKKEDRVL CELLRRGSFV  780
YAIKLHIVRG KNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1586594RKNKGKKKE
2664668KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g039240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480700.10.0PREDICTED: probable F-box protein At1g60180
SwissprotQ9SZ051e-148Y3440_ARATH; B3 domain-containing protein At4g34400
STRINGXP_010480700.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-129B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]