PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 243aa MW: 27417.6 Da PI: 4.731

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g037980.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59	1.1e-18	38	87	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a+++a+++++g Csa17g037980.1 38 KYVGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 87 79*****.******965...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.2E-13	38	87	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.246	38	95	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-32	38	101	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.07E-21	38	96	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.3E-28	38	95	IPR001471	AP2/ERF domain
CDD	cd00018	1.24E-31	38	94	No hit	No description
PRINTS	PR00367	6.3E-9	39	50	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.3E-9	61	77	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEINGNSNAG SSSRSKKSHR QKQQQPQPQP QQHNEEIKYV GVRRRPWGRY AAEIRNPTTK 60 ERYWLGTFDT AEEAALAYDR AARSIRGLTA RTNFVYSDMP RGSSVTSFIS PDESQRFISE 120 LFNPPSQPEA RYNNTNNLYT SSNNQNQNSI EFSYNGWPQE SESGYQSMNS NDEHCDHELP 180 PLPPSTCFGA ELTIPETDNY WNVAHANIDT FAFELDGFVD QNSLGQSGTE GFDSLSSTFF 240 NQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-18	35	94	11	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00163	DAP	Transfer from AT1G28160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g037980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC021044	0.0	AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBank	AC069471	0.0	AC069471.4 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010480691.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF087
Swissprot	Q9FZ90	1e-143	ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBL	R0I9T4	1e-142	R0I9T4_9BRAS; Uncharacterized protein
STRING	XP_010480691.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12933	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28160.1	1e-119	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]