PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g036060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 397aa    MW: 44220 Da    PI: 8.5448
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g036060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.94e-40176252177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq++gC+ dls+ak+yhr+h+vCe+hsk+p+v+vsgle+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q
  Csa17g036060.1 176 RCQIDGCDLDLSSAKDYHRKHRVCEKHSKCPKVTVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 252
                     6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.3E-33169238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.402174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37175253IPR004333Transcription factor, SBP-box
PfamPF031109.0E-31177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDCNMVSPFQ WDWENLIMSN PSRTENDSKQ LSTDWETEKG DGIESIVPDF LGFERVSSGS  60
ATSFWHTAVS KSSQSTSTNS SSPNVKRCKP PASESSPGDS CNNIDFVQAK ASTALEASVA  120
SAESDLCLKL GKRTYSEGFW GRNNNDIPAV SVKFLTPSVV ARKKSKSCGQ SMQVPRCQID  180
GCDLDLSSAK DYHRKHRVCE KHSKCPKVTV SGLERRFCQQ CSRFHAVSEF DEKKRSCRKR  240
LSHHNARRRK PQGVFSMNPE RVYDRRQQTN MLWKGLSLNT RSEDLYEWGS TYDTKPTQTE  300
SGFTLSFQRG NGSSEEQLVA SSSRSFSTFQ TSGGFSVGKS KFQLHGEGVG EYSGVLHETQ  360
DFHRALSLLS TSSDPLAQPH AHPFPQPFSY DVVPNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261772501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRKRLSHHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g036060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116350.0AJ011635.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 11.
GenBankAY0701060.0AY070106.1 Arabidopsis thaliana putative squamosa-promoter binding protein 2 (At1g27360) mRNA, complete cds.
GenBankAY0881850.0AY088185.1 Arabidopsis thaliana clone 42666 mRNA, complete sequence.
GenBankAY0912860.0AY091286.1 Arabidopsis thaliana putative squamosa-promoter binding protein 2 (At1g27360) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478059.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_010478060.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_010478061.10.0PREDICTED: squamosa promoter-binding-like protein 11
RefseqXP_010478062.10.0PREDICTED: squamosa promoter-binding-like protein 11
SwissprotQ9FZK00.0SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBLR0GPQ00.0R0GPQ0_9BRAS; Uncharacterized protein
STRINGXP_010478057.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50041653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27360.40.0squamosa promoter-like 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Stief A, et al.
    Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors.
    Plant Cell, 2014. 26(4): p. 1792-1807
    [PMID:24769482]
  3. Liu J, et al.
    The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice.
    PLoS Pathog., 2015. 11(2): p. e1004629
    [PMID:25658451]
  4. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]