PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g035000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 286aa    MW: 31357 Da    PI: 4.347
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g035000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.3e-1177122453
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                      GVr ++ +gr++AeI+ p     + ++ +lg+fgt+eeA ka++a + ++
  Csa17g035000.1  77 VGVRPRP-SGRFAAEIMNPI----TrTKQWLGTFGTPEEAEKAYVAKKVEY 122
                     69**999.7*********83....35888****************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.4E-741272IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000185.23E-1473115No hitNo description
SMARTSM003801.3E-474135IPR001471AP2/ERF domain
PROSITE profilePS5103212.97175133IPR001471AP2/ERF domain
PfamPF008476.8E-677119IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1077122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-1278118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MKSSVKPKRL LRKVSVIVSD PDATDDSSGD EWLGIPKPRK VKRIVHEITF LSQDSEISQD  60
GVKTSRKIPP RQAKYPVGVR PRPSGRFAAE IMNPITRTKQ WLGTFGTPEE AEKAYVAKKV  120
EYDAFVSCRS SVSSSVVSVT SQCLRSPASA SVSCVSVDDL SEEKTSLNKD VAASGDSAKE  180
VFANFDFSDL QIPDLSFLSA EEDIMVSGAN DAGLDFERFL NADSDHLLDD YYSLLDKDIN  240
LSGFENSVPS ELPDCDFTDM ELEFGDLKFA YADQLAPPLN IAFEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g035000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477921.10.0PREDICTED: ethylene-responsive transcription factor ERF116-like
RefseqXP_010477922.10.0PREDICTED: ethylene-responsive transcription factor ERF116-like
RefseqXP_010477923.10.0PREDICTED: ethylene-responsive transcription factor ERF116-like
SwissprotQ8GW171e-115EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLR0II301e-143R0II30_9BRAS; Uncharacterized protein
STRINGXP_010477921.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.25e-95ERF family protein