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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa17g033960.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
NAC |
| Protein Properties |
Length: 531aa MW: 60317.3 Da PI: 5.9801 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa17g033960.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.2 | 1.3e-52 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+
Csa17g033960.1 16 LLPGFRFHPTDEELVSFYLKRKVQHNPLSI-ELIRQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSS 109
579***************************.89***************7777889***************************************9 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +glkk+Lvfykgra kg+ktdW+mhe+rl
Csa17g033960.1 110 eGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143
56667***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 531 aa
Download sequence Send
to blast |
MGERNDDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH NPLSIELIRQ LDIYKYDPWD 60
LPKFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT GTDRPIYSSE GNKCIGLKKS 120
LVFYKGRAAK GVKTDWMMHE FRLPSLSEPS PPSKRFFDSP VSPNDSWAIC RIFKKTNTTT 180
LRALSHSFVS SLPPETSTDT MSDQKPSNTY HFSSDKILKT SSHYQFHHEN MNTPKTSNST 240
TPTVATISPF SYLDLTSYDK PLNVFTPVSC LEQQYLTNLF LSTQETQPQF PRPTLSNEIP 300
SFLLNTSSDS TYLGMGEYTN HIDLSAVLAQ EECPALFHHE NMNTPKTSNS TTPTVATISP 360
FSYLDLTSYD KPLNVFTPVS CLEQQYLTNL FLSTQETQPQ FPRPTLSNEI PSFLLNTSSD 420
STYLGMGEYT NHIDLSAVLA QEECPALVSL PQEYQEKGFE GNGVMKNMRG SSEDHHGHCD 480
TLRYDDFAST IDESHHHHHQ ELKQNMTLLE SYYSSLSSIN GDLPVCFSTT *
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 2e-55 | 16 | 178 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 2e-55 | 16 | 178 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 2e-55 | 16 | 178 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 2e-55 | 16 | 178 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 2e-55 | 16 | 178 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 2e-55 | 16 | 178 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 2e-55 | 16 | 178 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 2e-55 | 16 | 178 | 20 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC005508 | 0.0 | AC005508.1 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
