PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TALE

Protein Properties

Length: 173aa MW: 19855.3 Da PI: 6.6876

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g030550.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.4e-09	115	149	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ Csa17g030550.1 115 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 149 669*****************************985 PP
2	ELK	31.3	4.7e-11	69	90	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++LlrK++++++sLk EFs Csa17g030550.1 69 DLKDRLLRKFGSRISSLKLEFS 90 69*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51213	9.83	69	89	IPR005539	ELK domain
Pfam	PF03789	1.1E-7	69	90	IPR005539	ELK domain
SMART	SM01188	6.3E-5	69	90	IPR005539	ELK domain
PROSITE profile	PS50071	12.341	89	152	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-20	90	166	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-12	91	156	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.4E-28	94	153	IPR009057	Homeodomain-like
CDD	cd00086	2.08E-11	98	153	No hit	No description
Pfam	PF05920	1.7E-17	109	148	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	127	150	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MFLNHLWVEF LVSEKLSQGR GMSPHGDKTI SPLLTNDNGE DGAISSDEEL SGGDHEVAED 60 GKQRCEDRDL KDRLLRKFGS RISSLKLEFS KKKKKGKLPR EARQALLDWW NLHYKWPYPT 120 EGDKIALADA TGLDQKQINN WFINQRKRHW KPSENMPFAM MDDSSGSFFT EE*

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269\|PubMed:16798887}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g030550.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269\|PubMed:11311158, ECO:0000269\|PubMed:16798887}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB072361	1e-173	AB072361.1 Arabidopsis thaliana KNAT6S mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBank	AB072362	1e-173	AB072362.1 Arabidopsis thaliana KNAT6L mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBank	BT002930	1e-173	BT002930.1 Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
GenBank	BT004370	1e-173	BT004370.1 Arabidopsis thaliana clone U20256 putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010477633.1	1e-94	PREDICTED: homeobox protein knotted-1-like 6
Refseq	XP_023645734.1	2e-93	homeobox protein knotted-1-like 6
Swissprot	Q84JS6	4e-88	KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBL	R0GS91	1e-107	R0GS91_9BRAS; Uncharacterized protein
STRING	XP_006305909.1	1e-107	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM835	27	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.2	1e-82	KNOTTED1-like homeobox gene 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]