PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g029420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 365aa    MW: 41661.1 Da    PI: 8.1449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g029420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-15170221155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Csa17g029420.1 170 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 221
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.83E-13168225No hitNo description
SuperFamilySSF474597.85E-17169231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.196169220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-14169223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-12170221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10175226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
SRQKGERQTL PVSNFVFSPS LFLSRFLKSP FFFLTVSNQF FFFHIFEYIF SSVSGFKMPL  60
AAMLYPQDPF GYLSNCKDFM FHDLYSQEEV VAQDTKHNID KSCHEQSFVE HGKEEDRQWR  120
DCHQHPLLIP SLVEELGLPA NDVENHPPLQ QRRKRRRTRN SKNKEEIENQ RMTHIAVERN  180
RRKQMNEYLA VLRSLMPSSY AQRGDQASIV GGAINYVKEL EHILQSMGPK RTTTTSTTHD  240
VEGAKTSTSS LADPFSDFFS FPQFSTKSSE VPESSSSSAE IEVTVAESHA NIKILAKKKP  300
RQLIKLVASL QSLRLTLLHL NVTTHQNSIL YSISVKVEEG SQLNTVDDIA TALNQTIRRI  360
QEES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156QRRKRRR
2152156RKRRR
3152157RKRRRT
4170181RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g029420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477508.10.0PREDICTED: transcription factor bHLH94 isoform X2
SwissprotQ9SK911e-175BH094_ARATH; Transcription factor bHLH94
TrEMBLR0IHJ20.0R0IHJ2_9BRAS; Uncharacterized protein
STRINGXP_010477508.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-140bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]