PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g029100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 437aa    MW: 47554.9 Da    PI: 8.8392
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g029100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06107126626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+f+ + G Ck G++C+F H+
  Csa17g029100.1 107 CKFWIA-GNCKKGEQCQFLHS 126
                     666666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.878101128IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6101127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-7102126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-6103126IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.65E-45131433IPR017986WD40-repeat-containing domain
SMARTSM003203.5E-4133172IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.7E-43135430IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029424.099140436IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.483140181IPR001680WD40 repeat
PfamPF117151.3E-6155262No hitNo description
PRINTSPR003201.6E-7159173IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
SMARTSM00320130215253IPR001680WD40 repeat
SMARTSM003202.1E-4264302IPR001680WD40 repeat
PfamPF004002.9E-5266302IPR001680WD40 repeat
PROSITE profilePS5008210.909272311IPR001680WD40 repeat
PRINTSPR003201.6E-7289303IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780289303IPR019775WD40 repeat, conserved site
SMARTSM003203.2E-5305342IPR001680WD40 repeat
PfamPF004000.0012307341IPR001680WD40 repeat
PRINTSPR003201.6E-7329343IPR020472G-protein beta WD-40 repeat
SMARTSM00320160348389IPR001680WD40 repeat
SMARTSM003201.6392429IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDFEGPRRYS QSRNFVGGVK RQPQAFAADV VSRRPSYYAP YDNTMKKQGP NKFSRNLVWT  60
SKQYKSPDQA NGSSTKPKPP VLGRGCSVSV SSSRKTAISD TKKSVCCKFW IAGNCKKGEQ  120
CQFLHSWSSR FPGLAMVASL EGHKNDIKGI ALPQGSDKLF SVSSDDTLRI WDCHTGQCVH  180
TINLQAEAKA AGSLISEDSW VFLGLRNAVK AFNVQSSKDL HLDGVVGGQV RAMTVANGML  240
FAGTSSGTIS VWKANTTDSD VSDPFKYLTS LEGHHSGEVT CFVVGKQLLY SGSVDKTIKV  300
WDLDTLQCVM TLKQHTDTVT SLLCWEKCLI SSSLDGTIKV WTCSENGSLE VTHTRRQEQS  360
VHALCGVHDA EAKPIMFCSY QNGTVGIYDL PSFEERGKMF STHTITTLTV GPGGLLFSGD  420
KTGNLRVWSL AAGTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-1913943310322Tako8
6g6n_A1e-1913943310322Tako8
6g6n_B1e-1913943310322Tako8
6g6n_C1e-1913943310322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g029100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477476.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGXP_010477476.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein