PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g026520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WOX

Protein Properties

Length: 401aa MW: 45419.7 Da PI: 6.7108

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g026520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	79	139	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ Csa17g026520.1 79 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIATELsehgQITETNVYNWFQNRRARSKR 139 89***************99************************************97 PP
2	Homeobox	62.3	7.5e-20	278	338	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +++ + +p+ ++++e+A++l ++ e++V++WFqNrRa+ k+ Csa17g026520.1 278 RHRWTPTSKQLQILENIYKEgSGTPNPRRIKEIATELsehgQIMEKNVYNWFQNRRARSKR 338 89***************99************************************97 PP
3	Wus_type_Homeobox	100.3	1.4e-32	78	141	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++i++eL+e+G+i+++NV++WFQNr+aR+++kq Csa17g026520.1 78 SRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQ 141 689***********************************************************97 PP
4	Wus_type_Homeobox	100.8	9.9e-33	277	340	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++yk+G tPn ++i++i++eL+e+G+i++kNV++WFQNr+aR+++kq Csa17g026520.1 277 TRHRWTPTSKQLQILENIYKEGSGTPNPRRIKEIATELSEHGQIMEKNVYNWFQNRRARSKRKQ 340 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.45E-18	72	145	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-16	72	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	75	140	IPR001356	Homeobox domain
SMART	SM00389	8.7E-14	77	144	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-18	79	139	IPR001356	Homeobox domain
CDD	cd00086	1.05E-11	83	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-14	274	342	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.495	274	339	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-16	275	343	IPR009057	Homeodomain-like
SMART	SM00389	2.7E-13	276	343	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-17	278	338	IPR001356	Homeobox domain
CDD	cd00086	6.02E-12	278	340	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MEREMQNDAY NGRGRVMTEE QMEILRKQIA VYAVICDQLV LLHNSLSSYH PFSSGMRPMV 60 GGYFDPMGSS SSSHRISSRH RWTPTSTQLQ ILESIYEEGS GTPNRRRIRE IATELSEHGQ 120 ITETNVYNWF QNRRARSKRK QPQTTTTANG QTDDVAVTTE ERRSCGDSGG LESYEHILFP 180 SPDLGIEHLK ERGESKFVKE EMEQGSLNGT YDGRVMTEEQ METLRKQIAI YAIICDQLVV 240 LHNSLSSFPP LSSGMNLMGG GYFDPMVASS SAHGMSTRHR WTPTSKQLQI LENIYKEGSG 300 TPNPRRIKEI ATELSEHGQI MEKNVYNWFQ NRRARSKRKQ PQTTTVTGPT DDAAVTTEER 360 SYGDSGGFES YEHILFPSPD RGIEHLLSRE KFMENKFPTG *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MEREMQNDAY NGRGRVMTEE QMEILRKQIA VYAVICDQLV LLHNSLSSYH PFSSGMRPMV  60
GGYFDPMGSS SSSHRISSRH RWTPTSTQLQ ILESIYEEGS GTPNRRRIRE IATELSEHGQ  120
ITETNVYNWF QNRRARSKRK QPQTTTTANG QTDDVAVTTE ERRSCGDSGG LESYEHILFP  180
SPDLGIEHLK ERGESKFVKE EMEQGSLNGT YDGRVMTEEQ METLRKQIAI YAIICDQLVV  240
LHNSLSSFPP LSSGMNLMGG GYFDPMVASS SAHGMSTRHR WTPTSKQLQI LENIYKEGSG  300
TPNPRRIKEI ATELSEHGQI MEKNVYNWFQ NRRARSKRKQ PQTTTVTGPT DDAAVTTEER  360
SYGDSGGFES YEHILFPSPD RGIEHLLSRE KFMENKFPTG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	339	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g026520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441297	0.0	AJ441297.1 Arabidopsis thaliana mRNA for homeodomain protein PALE-2 (pale-2 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459763.1	1e-143	PREDICTED: putative WUSCHEL-related homeobox 10
Swissprot	Q9LM84	1e-126	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A178W4J5	1e-123	A0A178W4J5_ARATH; WOX14
STRING	XP_010459763.1	1e-142	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-118	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]