PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g026520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 401aa MW: 45419.7 Da PI: 6.7108 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 79 | 139 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ Csa17g026520.1 79 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIATELsehgQITETNVYNWFQNRRARSKR 139 89*****************99**************************************97 PP | |||||||
2 | Homeobox | 62.3 | 7.5e-20 | 278 | 338 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +++ + +p+ ++++e+A++l ++ e++V++WFqNrRa+ k+ Csa17g026520.1 278 RHRWTPTSKQLQILENIYKEgSGTPNPRRIKEIATELsehgQIMEKNVYNWFQNRRARSKR 338 89*****************99**************************************97 PP | |||||||
3 | Wus_type_Homeobox | 100.3 | 1.4e-32 | 78 | 141 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++i++eL+e+G+i+++NV++WFQNr+aR+++kq Csa17g026520.1 78 SRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQ 141 689***********************************************************97 PP | |||||||
4 | Wus_type_Homeobox | 100.8 | 9.9e-33 | 277 | 340 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++yk+G tPn ++i++i++eL+e+G+i++kNV++WFQNr+aR+++kq Csa17g026520.1 277 TRHRWTPTSKQLQILENIYKEGSGTPNPRRIKEIATELSEHGQIMEKNVYNWFQNRRARSKRKQ 340 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-18 | 72 | 145 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-16 | 72 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.9 | 75 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-14 | 77 | 144 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.9E-18 | 79 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.05E-11 | 83 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 274 | 342 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.495 | 274 | 339 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-16 | 275 | 343 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.7E-13 | 276 | 343 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-17 | 278 | 338 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.02E-12 | 278 | 340 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MEREMQNDAY NGRGRVMTEE QMEILRKQIA VYAVICDQLV LLHNSLSSYH PFSSGMRPMV 60 GGYFDPMGSS SSSHRISSRH RWTPTSTQLQ ILESIYEEGS GTPNRRRIRE IATELSEHGQ 120 ITETNVYNWF QNRRARSKRK QPQTTTTANG QTDDVAVTTE ERRSCGDSGG LESYEHILFP 180 SPDLGIEHLK ERGESKFVKE EMEQGSLNGT YDGRVMTEEQ METLRKQIAI YAIICDQLVV 240 LHNSLSSFPP LSSGMNLMGG GYFDPMVASS SAHGMSTRHR WTPTSKQLQI LENIYKEGSG 300 TPNPRRIKEI ATELSEHGQI MEKNVYNWFQ NRRARSKRKQ PQTTTVTGPT DDAAVTTEER 360 SYGDSGGFES YEHILFPSPD RGIEHLLSRE KFMENKFPTG * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 331 | 339 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g026520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441297 | 0.0 | AJ441297.1 Arabidopsis thaliana mRNA for homeodomain protein PALE-2 (pale-2 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010459763.1 | 1e-143 | PREDICTED: putative WUSCHEL-related homeobox 10 | ||||
Swissprot | Q9LM84 | 1e-126 | WOX14_ARATH; WUSCHEL-related homeobox 14 | ||||
TrEMBL | A0A178W4J5 | 1e-123 | A0A178W4J5_ARATH; WOX14 | ||||
STRING | XP_010459763.1 | 1e-142 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12211 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 1e-118 | WUSCHEL related homeobox 14 |
Publications ? help Back to Top | |||
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