PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g024100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 341aa    MW: 37537.6 Da    PI: 8.0021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g024100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-095177128
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                     r +W++eE++++++a+k++G g W+ I 
   Csa17g024100.1 51 REKWSEEEHDRFLEAIKLYGRG-WRQIQ 77
                     789*******************.**996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-64180IPR009057Homeodomain-like
PfamPF002491.1E-65177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-55177IPR009057Homeodomain-like
CDDcd001675.72E-45376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAAEDRCEEE LSSNVENGSC NSNEGTNPET TSHWTENVVK VRKPYTVTKQ REKWSEEEHD  60
RFLEAIKLYG RGWRQIQVIL SDSLQMTQEA DTISERSNKA VVIPPPRPKR KPAHPYPRKS  120
PVPYSQSPPS NLSAMEKGTK SPTSVLSSFA SEDQNNRCSS PNSSTSDIQS IGGTSINKTN  180
DQATSKQSLK EGAVNGSTPM SSIVLFGKIV LVTEESHKPS SYTDDNDRKS MPGQENHCSG  240
IKNSTLHIGS RHVDTDLSLG IWETSCTGSN AFGSVTEMSE NLEKNAEKRL SFLEKQGSCD  300
PPASGFRPYK RCLSEREVTS SLSLVTSKEQ KSRRKARVCS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g024100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0133541e-109AC013354.6 Genomic sequence for Arabidopsis thaliana BAC F15H18 from chromosome I, complete sequence.
GenBankCP0026841e-109CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477007.10.0PREDICTED: protein REVEILLE 7
SwissprotB3H5A81e-167RVE7_ARATH; Protein REVEILLE 7
TrEMBLR0GQU50.0R0GQU5_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010477007.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-162MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]