PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g023190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 599aa    MW: 66756.5 Da    PI: 6.1236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g023190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-10492540348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E e+lv++v+++G g W+ I +        Rt+ ++k++w++++
   Csa17g023190.1 492 AWTVTEVEKLVEGVTKYGVGKWSEIKKVSFssfVYRTPVDLKDKWRNLR 540
                      7************************9998899*99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.582485544IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-13487541IPR009057Homeodomain-like
SuperFamilySSF466893.21E-16487547IPR009057Homeodomain-like
SMARTSM007173.6E-9489542IPR001005SANT/Myb domain
CDDcd116604.87E-20491541No hitNo description
PfamPF002491.2E-6492540IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MFGTVEDYEE MLQHSAFLES RSRSLSSTNQ TGNPVAYKLV RVAGDGRLVP ATDEEMLEVK  60
ELLEKNENDM PVLPDPIQTE EYIPDEGSPS QFLQLDCFEG LYEPETAEAY TEIFDPGLFQ  120
SETAEAYTEN LNSRLEEFQS EALLREPVRF PSNGCSMNQC RDVAPYSNAT GSPKEPALST  180
AASKPEVSRV AGEICLDNLS IKSLQDTFRA KFGRETTCKS KQWLKRRITM GMINSSIVPT  240
TSLTIYDNKL VGGSQDTSDA FSNDTVDEAR AMESKDTPSR PDCLKGHSND FGRSPVETFV  300
DHYSGNEDFE GEDRSAKRVR KPTRRYIEEI SKPSEKQQSD ESMIPSKDQG SIEAVSSGGR  360
VVVTRMVSLA GSRIQVPYVS HVRRSRPREN IMALGEFHSK SWEVKATPDK SNLNLSPSQW  420
NNDVNRVSGV KSASGPVKKE SGKGHLKPIS NEVDQDYMDS ENLDSSGESS DDNNRVDLPI  480
TQSGIRRKHH RAWTVTEVEK LVEGVTKYGV GKWSEIKKVS FSSFVYRTPV DLKDKWRNLR  540
RACFTQTPSN RMGGPNKQGS MAIPTHIMLQ VRELAQKQSP VRKGSRVVVK GSSRNGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g023190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476899.10.0PREDICTED: uncharacterized protein LOC104756078 isoform X2
TrEMBLR0GPJ10.0R0GPJ1_9BRAS; Uncharacterized protein
STRINGXP_010476898.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.20.0TRF-like 3