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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g022190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 180aa MW: 20908.8 Da PI: 4.9138 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.2 | 6.4e-18 | 54 | 143 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k++++ +s+ + +p f e+ + ++t+ l d sgr W+v++ +k++++++lt GW++Fv++n+L++g + F +d++++f +v Csa17g022190.1 54 FMKAFIS--QKSSKSFAIPLGFN-EYfPD--PLPITVDLLDYSGRCWTVRM--KKRGEKVLLTLGWENFVRDNNLEDGKYLNFIYDSDRTF--YV 139 6677744..4455558******8.66243..499*****************..*******************************9876666..88 PP EEE- CS B3 95 kvfr 98 +f Csa17g022190.1 140 VIFG 143 8886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 49 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.085 | 52 | 145 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-23 | 52 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.3E-18 | 54 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-16 | 54 | 143 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
ITNKRVGFKS VFSFHKLHIS LCSFLFHLWT LLVATFGLSL FSSMAAFISE EVRFMKAFIS 60 QKSSKSFAIP LGFNEYFPDP LPITVDLLDY SGRCWTVRMK KRGEKVLLTL GWENFVRDNN 120 LEDGKYLNFI YDSDRTFYVV IFGHDMCSEF RAFPQVVVDV DDYETGENDE EEEEEQKQK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 7e-58 | 42 | 147 | 1 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g022190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010476776.1 | 6e-98 | PREDICTED: B3 domain-containing protein At1g16640-like | ||||
Swissprot | Q9FX77 | 7e-65 | Y1664_ARATH; B3 domain-containing protein At1g16640 | ||||
TrEMBL | D7KEH6 | 6e-66 | D7KEH6_ARALL; Transcriptional factor B3 family protein | ||||
STRING | XP_010476776.1 | 2e-97 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15751 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16640.1 | 2e-67 | B3 family protein |
Publications ? help Back to Top | |||
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