PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g022100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 24202.5 Da PI: 5.0054 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 57.3 | 4.5e-18 | 111 | 165 | 46 | 100 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+l+e++r da++s+vyeA+ar++dPvyG+vg+i++lq+qle l+++la +++e Csa17g022100.1 111 FKELSENQRGDAVNSMVYEANARVQDPVYGCVGTISSLQRQLEALQTQLAFAQAE 165 68999*********************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 8.1E-16 | 112 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAQEGDFCTT FIQYFVLQKI QREDWHLSLL LIRKHIDSCM CVVYVCIILD FEIGSSILFK 60 HEQRNYQLLS LQVHATNMVG AFVDCGAPCT SSSKLLFPVR SGRYQVAGGS FKELSENQRG 120 DAVNSMVYEA NARVQDPVYG CVGTISSLQR QLEALQTQLA FAQAELIQIR TLCRIDTKPS 180 PYTTSTVTFP TNKDFSSEVD MAFAYEDGSG DSLWSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-15 | 111 | 168 | 56 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-15 | 111 | 168 | 56 | 113 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g022100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16530.1 | 1e-58 | ASYMMETRIC LEAVES 2-like 9 |