PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g021650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 343aa    MW: 38663.9 Da    PI: 5.9218
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g021650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-1154110155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++GV++++++gr++A+++d  s+n  ++k+ + g ++ ++ Aa+a++ a++k++g
  Csa17g021650.1  54 SVHRGVTRHRWTGRYEAHLWDkNSWNEtQTKKGRQGAYDEEDAAARAYDLAALKYWG 110
                     689******************88889998888888*****99*************98 PP
2AP2513.5e-16153204155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Csa17g021650.1 153 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 204
                     89****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-1454119IPR016177DNA-binding domain
PROSITE profilePS5103218.42655118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-1155118IPR001471AP2/ERF domain
SMARTSM003801.0E-1755124IPR001471AP2/ERF domain
PfamPF008474.3E-855110IPR001471AP2/ERF domain
PRINTSPR003673.1E-55667IPR001471AP2/ERF domain
CDDcd000181.37E-14153214No hitNo description
SuperFamilySSF541712.16E-17153214IPR016177DNA-binding domain
PfamPF008473.8E-11153204IPR001471AP2/ERF domain
PROSITE profilePS5103217.859154212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-17154212IPR001471AP2/ERF domain
SMARTSM003801.4E-25154218IPR001471AP2/ERF domain
PRINTSPR003673.1E-5194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MHIAVEVSPV MEEITRKSKK TSVESDESAG PAVVIKAKRK RRSQPREAPP QRSSVHRGVT  60
RHRWTGRYEA HLWDKNSWNE TQTKKGRQGA YDEEDAAARA YDLAALKYWG RDTILNFPLC  120
NYEEDIKEME SQSKEEYIGS LRRKSSGFSR GVSKYRGVAK HHHNGRWEAR IGRVFGNKYL  180
YLGTYATQEE AAIAYDIAAI EYRGLNAVTN FDISRYLKLP APENLTDAAN QPLEEIPPSD  240
LSPFINPTNH EPELSSQSQS SSEDNDDRKT KILKSSPLNP EEVIGPSTPP EIVPPRRSFP  300
EDIQTYFGCQ NSGKLTTEED DVIFGGLDSF LTPDFYSELD GC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g021650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459150.0AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds.
GenBankAY1338800.0AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476708.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN40.0AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1J3HBM00.0A0A1J3HBM0_NOCCA; AP2-like ethylene-responsive transcription factor
STRINGXP_010476708.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.10.0ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]