 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Csa17g021650.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
Family |
AP2 |
Protein Properties |
Length: 343aa MW: 38663.9 Da PI: 5.9218 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa17g021650.1 | genome | CSGP | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 36.6 | 1.1e-11 | 54 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s ++GV++++++gr++A+++d s+n ++k+ + g ++ ++ Aa+a++ a++k++g
Csa17g021650.1 54 SVHRGVTRHRWTGRYEAHLWDkNSWNEtQTKKGRQGAYDEEDAAARAYDLAALKYWG 110
689******************88889998888888*****99*************98 PP
|
2 | AP2 | 51 | 3.5e-16 | 153 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV ++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g
Csa17g021650.1 153 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 204
89****************99966...3.6*************************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MHIAVEVSPV MEEITRKSKK TSVESDESAG PAVVIKAKRK RRSQPREAPP QRSSVHRGVT 60 RHRWTGRYEA HLWDKNSWNE TQTKKGRQGA YDEEDAAARA YDLAALKYWG RDTILNFPLC 120 NYEEDIKEME SQSKEEYIGS LRRKSSGFSR GVSKYRGVAK HHHNGRWEAR IGRVFGNKYL 180 YLGTYATQEE AAIAYDIAAI EYRGLNAVTN FDISRYLKLP APENLTDAAN QPLEEIPPSD 240 LSPFINPTNH EPELSSQSQS SSEDNDDRKT KILKSSPLNP EEVIGPSTPP EIVPPRRSFP 300 EDIQTYFGCQ NSGKLTTEED DVIFGGLDSF LTPDFYSELD GC*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AY045915 | 0.0 | AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds. |
GenBank | AY133880 | 0.0 | AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds. |