PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g021650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 343aa MW: 38663.9 Da PI: 5.9218 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.6 | 1.1e-11 | 54 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++gr++A+++d s+n ++k+ + g ++ ++ Aa+a++ a++k++g Csa17g021650.1 54 SVHRGVTRHRWTGRYEAHLWDkNSWNEtQTKKGRQGAYDEEDAAARAYDLAALKYWG 110 689******************88889998888888*****99*************98 PP | |||||||
2 | AP2 | 51 | 3.5e-16 | 153 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV ++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Csa17g021650.1 153 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 204 89****************99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.23E-14 | 54 | 119 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.426 | 55 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-11 | 55 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-17 | 55 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-8 | 55 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-5 | 56 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-14 | 153 | 214 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-17 | 153 | 214 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-11 | 153 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.859 | 154 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-17 | 154 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-25 | 154 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-5 | 194 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MHIAVEVSPV MEEITRKSKK TSVESDESAG PAVVIKAKRK RRSQPREAPP QRSSVHRGVT 60 RHRWTGRYEA HLWDKNSWNE TQTKKGRQGA YDEEDAAARA YDLAALKYWG RDTILNFPLC 120 NYEEDIKEME SQSKEEYIGS LRRKSSGFSR GVSKYRGVAK HHHNGRWEAR IGRVFGNKYL 180 YLGTYATQEE AAIAYDIAAI EYRGLNAVTN FDISRYLKLP APENLTDAAN QPLEEIPPSD 240 LSPFINPTNH EPELSSQSQS SSEDNDDRKT KILKSSPLNP EEVIGPSTPP EIVPPRRSFP 300 EDIQTYFGCQ NSGKLTTEED DVIFGGLDSF LTPDFYSELD GC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g021650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045915 | 0.0 | AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds. | |||
GenBank | AY133880 | 0.0 | AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010476708.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 0.0 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1J3HBM0 | 0.0 | A0A1J3HBM0_NOCCA; AP2-like ethylene-responsive transcription factor | ||||
STRING | XP_010476708.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 0.0 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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