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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa17g020170.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
BBR-BPC |
| Protein Properties |
Length: 291aa MW: 32399.5 Da PI: 10.2699 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa17g020170.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 362.7 | 7.1e-111 | 1 | 290 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd.....maflqrdkalaernkalverdnkllall 85
mdddg+ rn+gyyepa a++k nlglqlms+i +r++k+ r+ nl ++++++++++++ m++ +++++ +++k++++l
Csa17g020170.1 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRDPNL-MIGPNGSYHHQEpppihMSY----NWINQ-------QKDKFFNML 80
99**99..9*******999**************.9**************.************99999999....*****.......899****** PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqq.lse...pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
+v++s p++ +vl++t+s+ s+q+ l++ +q+e+++v +l+ e ++++k++k+++k +++++k+kk +k+k++++++++
Csa17g020170.1 81 PVTTS-----PNYGNVLPETSSAPSMQMnLHHhhhHQTEENPVV--------KLEDEVVNQTNKKRKTNSKAGSGTTTKAKKPRKPKDENSNNNN 162
*9997.....99****************5333223333333333........2222222344455555555667777777777777777666555 PP
GAGA_bind 177 kvkkesad...erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
++++++++ +r+k kks+d+v+ngvs+D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+
Csa17g020170.1 163 NNNNNNTNnnvSRVKPAKKSVDMVINGVSMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKV 257
54444433224789********************************************************************************* PP
GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LekLa++G++++np+DLk+hWA+HGtnkfvtir
Csa17g020170.1 258 LEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 290
********************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRDPNLMIGP NGSYHHQEPP 60
PIHMSYNWIN QQKDKFFNML PVTTSPNYGN VLPETSSAPS MQMNLHHHHH HQTEENPVVK 120
LEDEVVNQTN KKRKTNSKAG SGTTTKAKKP RKPKDENSNN NNNNNNNNTN NNVSRVKPAK 180
KSVDMVINGV SMDISGLPVP VCTCTGAPQQ CYRWGCGGWQ SACCTTNISM HPLPMSTKRR 240
GARISGRKMS QGAFKKVLEK LASDGFNFGN PIDLKSHWAR HGTNKFVTIR *
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC006917 | 0.0 | AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence. |
| GenBank | AC010657 | 0.0 | AC010657.3 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome I, complete sequence. |
| GenBank | AY058073 | 0.0 | AY058073.1 Arabidopsis thaliana At1g14680/F10B6_22 mRNA, complete cds. |
| GenBank | AY090305 | 0.0 | AY090305.1 Arabidopsis thaliana At1g14680/F10B6_22 mRNA, complete cds. |
| GenBank | AY380568 | 0.0 | AY380568.1 Arabidopsis thaliana basic pentacysteine 2 (BPC2) mRNA, complete cds. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
