PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g020030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 500aa    MW: 52924.6 Da    PI: 9.7152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g020030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012107127323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ C+k F r  nL+ H r H
  Csa17g020030.1 107 CEVCNKGFQREQNLQLHRRGH 127
                     *******************88 PP
2zf-C2H214.10.00014181203123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  Csa17g020030.1 181 FKCEKCSKRYAVQSDWKAHSKTC 203
                     89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-7104127No hitNo description
Gene3DG3DSA:3.30.160.609.4E-6104127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.025105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SMARTSM00355130146176IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5169202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.57E-7176201No hitNo description
SMARTSM0035588181201IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSSSYNTSIA SSAAQSFLIS GARTGAGLGV GVGAGAGAGA GAGRGVGARV GANNFNRDHE  60
PAMIQQPNSS VAPPPKKRRN QPGNPNPDAE VIALSPQTIM ATNRFLCEVC NKGFQREQNL  120
QLHRRGHNLP WKLKQKSNKE VRRKVYLCPE ATCVHHDPAR ALGDLTGIKK HYYRKHGEKK  180
FKCEKCSKRY AVQSDWKAHS KTCGTKEYRC DCGTIFSRRD SYITHRAFCD ALIQESARNP  240
TVSFTAMSAA GGGGGAGGRH GFYGGAASSL SHNHFGSSST SGFTPLAAAG YNLNRSSPNK  300
FEEFVPQSSN PNSGGPTNFL MQCAANQGLL AQNDQSLMNQ HGLINLGDNI NSNNNHLFNL  360
GYFQDTKNPD QASVPSLFTS GADNNDPSAL LRGLTSSSSS SVVVNDFGDT DNGNLQGLMN  420
SLAATTDHQS RSGSIFDLHF GNNLSMGGSD RLTLDFLGVN GGIVSNVNGR GGGRGGGRNG  480
APLDTEMKFS HPNHPFGKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32177243369Zinc finger protein JACKDAW
5b3h_F2e-32177243369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469477RGGGRGGGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g020030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476519.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like isoform X2
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLE4MXD60.0E4MXD6_EUTHA; mRNA, clone: RTFL01-38-E19
TrEMBLV4KCA70.0V4KCA7_EUTSA; Uncharacterized protein
STRINGXP_010476514.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]