PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g019340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 526aa    MW: 56734.3 Da    PI: 8.3088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g019340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.12.1e-34241297259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgsefprsYY+Cts+gCpvkkkvers  d++v+ei+Y+g+Hnhe
  Csa17g019340.1 241 DDGYNWRKYGQKQVKGSEFPRSYYKCTSQGCPVKKKVERSL-DGQVTEIIYKGQHNHE 297
                     8****************************************.***************8 PP
2WRKY106.21.7e-33421479159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  Csa17g019340.1 421 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 479
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-30235299IPR003657WRKY domain
SuperFamilySSF1182901.96E-26239299IPR003657WRKY domain
SMARTSM007744.4E-39240298IPR003657WRKY domain
PfamPF031061.8E-26241297IPR003657WRKY domain
PROSITE profilePS5081125.545241299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36406481IPR003657WRKY domain
SuperFamilySSF1182901.44E-29413481IPR003657WRKY domain
PROSITE profilePS5081137.975416481IPR003657WRKY domain
SMARTSM007743.8E-39421480IPR003657WRKY domain
PfamPF031066.3E-26422479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSEKEEEVPS TSKSTGAPSR PTLSLPPRPF SEMFFNGGVG FSPGPMTLVS NMFSDSDEFR  60
SFSQLLAGAM ASPATAAAAA SGGASDYHQR IGGDGNDNNN NSSSGGGGDV DPRFKQNRPT  120
GLMISQSQSP SMLTLPPGLS PAMRLDSPSF LGLFSPVQGS YGMTHQQALA QVTAQAVQAN  180
ANMQPQTEYP PSSQVQSFSS GQAQVPTSAP HSSVPAQRET SDVTIIEHRS QQPLNVDKPA  240
DDGYNWRKYG QKQVKGSEFP RSYYKCTSQG CPVKKKVERS LDGQVTEIIY KGQHNHEPPQ  300
NTKRGNKDST ANLNGSSSLN NNRGSSELAV SQFQTNSSNK TKRDQHEAAS QATTTEHMSE  360
ASDSEEVGNG ETGVREKDEN EPDTKRRSIE VRVSEPAPAA SHRTVTEPRI IVQTTSEVDL  420
LDDGYRWRKY GQKVVKGNPY PRSYYKCTTP GCGVRKHVER AATDPKAVVT TYEGKHNHDL  480
PAAKSSSHAA AAAAQLRPDN RHGGLANINQ QQPVARLRLK EEQTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-46241482878Probable WRKY transcription factor 4
2lex_A3e-46241482878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g019340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4258350.0AF425835.1 Arabidopsis thaliana WRKY transcription factor 4 (WRKY4) mRNA, complete cds.
GenBankAY0456760.0AY045676.1 Arabidopsis thaliana At1g13960/F7A19_5 mRNA, complete cds.
GenBankBT0026290.0BT002629.1 Arabidopsis thaliana At1g13960/F7A19_5 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476427.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLD7KBF40.0D7KBF4_ARALL; WRKY DNA-binding protein 4
STRINGXP_010476427.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]