PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g018630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 358aa    MW: 40805.4 Da    PI: 5.8913
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g018630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.11.5e-26184248156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsek.........AtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+++LH+rF++a+++LGG++          AtPk+i+elmk++gLt+++vkSHLQkYRl+
  Csa17g018630.1 184 KQRRCWSSQLHRRFLNALQHLGGPHGeffdifymiATPKQIRELMKIDGLTNDEVKSHLQKYRLH 248
                     79*********************984444444455****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.86E-14183251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-25183251IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-23184248IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MIKNLSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKREMPEMT  60
TENVYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE ELDDEHGNHD PDNDSEDKNT  120
KSDWLKSVQL WNQPDPLLPK EERLQQEMME TVKRDHENMR KDPMVNGGEG RKREAEKDVG  180
GGRKQRRCWS SQLHRRFLNA LQHLGGPHGE FFDIFYMIAT PKQIRELMKI DGLTNDEVKS  240
HLQKYRLHTR RPRQTVPNNE NSQTQHFVVV GGLWVPQPDY STGKTTGGVT TSSTTTTTGI  300
YGAMAAPPPP QWPSHSNFRP SIIAEEGSGS HSEEVVVVRC SSPAMSSSTR NHYVKNH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g018630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3673360.0AF367336.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds.
GenBankAY1248650.0AY124865.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495195.10.0PREDICTED: myb family transcription factor EFM-like isoform X1
SwissprotQ9FX670.0HRS1_ARATH; Transcription factor HRS1
TrEMBLD7KQE40.0D7KQE4_ARALL; Myb family transcription factor
STRINGXP_010495195.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135081728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.10.0G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  2. Kiba T, et al.
    Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily.
    Plant Cell, 2018. 30(4): p. 925-945
    [PMID:29622567]