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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Csa17g016820.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
AP2 |
| Protein Properties |
Length: 395aa MW: 44402.9 Da PI: 5.1572 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa17g016820.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 45.1 | 2.5e-14 | 29 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+ y+G+r++ +Wv+e+r+p +r++lg++ ta++Aa+a++ a ++l+g
Csa17g016820.1 29 PVYRGIRRRN-GDKWVCEVREP-----IhqRRIWLGTYPTADMAARAHDVAVLALRG 79
68*****877.9******9997.....337*************************98 PP
|
| 2 | AP2 | 45.1 | 2.5e-14 | 216 | 266 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+ y+G+r++ +Wv+e+r+p +r++lg++ ta++Aa+a++ a ++l+g
Csa17g016820.1 216 PVYRGIRRRN-GDKWVCEVREP-----IhqRRIWLGTYPTADMAARAHDVAVLALRG 266
68*****877.9******9997.....337*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MMNNDEIVLA EMRPKKRAGR RVFKETRHPV YRGIRRRNGD KWVCEVREPI HQRRIWLGTY 60
PTADMAARAH DVAVLALRGR SVCLNFADSA WRLPVPESNH PDVIRRAAAE AAEMFRPADF 120
GGGITVLPFS GDEVDLGSGS GSGSGSEELN SSSYGYGDYE EVSTTMMRLA EEPLMSPPRS 180
YMEEMTPNVY MEEEACYEDM PKKRAGRRVF KETRHPVYRG IRRRNGDKWV CEVREPIHQR 240
RIWLGTYPTA DMAARAHDVA VLALRGRSVC LNFADSAWRL PVPESNHPDV IRRAAAEAAE 300
MFRPADFGGG ITVLPFSGDE VDLGSGSGSG SGSEELNSSS YGYGDYEEVS TTMMRLAEEP 360
LMSPPRSYME EMTPNVYMEE EACYEDMSLW SYNY*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
| Publications
? help Back to Top |
- Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
Plant Signal Behav, 2014. 9(3): p. e28211
[PMID:24614501] - Kazama D, et al.
Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
Plants (Basel), 2013. 2(4): p. 769-85
[PMID:27137403] - Song GQ,Gao X
Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
BMC Plant Biol., 2017. 17(1): p. 106
[PMID:28629320] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
Sci Rep, 2018. 8(1): p. 771
[PMID:29335449]
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