PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g015580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 382aa MW: 42230 Da PI: 5.221 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 133.8 | 5.9e-42 | 157 | 252 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 +fqr+w+e+Dei++LqGl+d+k++tg+sp+dd++++y+ vkks+sf+vsk q++eK+r+LKkK++++v kak+g+epsf+k+hd+ +felsk +W Csa17g015580.1 157 YFQRVWTEDDEIAVLQGLMDYKKETGVSPYDDTNGVYQLVKKSVSFDVSKIQFMEKLRSLKKKYENNVGKAKNGEEPSFAKPHDRRTFELSKLVW 251 79********************************************************************************************* PP DUF573 97 g 97 g Csa17g015580.1 252 G 252 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.8E-35 | 158 | 252 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MSSKRFDPME DPPSASSSDD DEVDAPLEEG DEIVGNSSSD EEEYDDDDLP SAPPMKNVLF 60 LPATTGKLVS DSESGSGEET ESDSEPKKKK DQFLTNHPTV KHVTETKDSV AKDQDSKKVK 120 TFEKSVGKRS RQTDEGVVSS TKRVKKSGGG EETKKTYFQR VWTEDDEIAV LQGLMDYKKE 180 TGVSPYDDTN GVYQLVKKSV SFDVSKIQFM EKLRSLKKKY ENNVGKAKNG EEPSFAKPHD 240 RRTFELSKLV WGANGMALDS VVKPNGKSKK SSKSKKVESV KQEIDSSLPN GKNSEDVMTT 300 NKGVVEMDSF AKSSLVKSLA RVGVDELAAD KGLSMLASED KKRIEEQWKA LQVREFEFCS 360 QKSGFIHEVV TKIGEAFRSN V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g015580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010476078.1 | 0.0 | PREDICTED: probable transcription factor At1g11510 | ||||
Swissprot | C0SUU6 | 1e-119 | STKLA_ARATH; Probable transcription factor At1g11510 | ||||
TrEMBL | R0I1M2 | 1e-147 | R0I1M2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010476078.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 6e-88 | DNA-binding storekeeper protein-related transcriptional regulator |