PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g013320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 951aa    MW: 107611 Da    PI: 6.351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g013320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.5e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
   Csa17g013320.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding34.25.9e-1160103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k+l++  W+tIa  +g  Rt+ qc +r+ k+l
   Csa17g013320.1  60 TEWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001671.96E-111053No hitNo description
PfamPF139214.9E-131070No hitNo description
SuperFamilySSF466891.01E-2033108IPR009057Homeodomain-like
CDDcd116591.17E-2955106No hitNo description
Gene3DG3DSA:1.10.10.606.6E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.67558107IPR017930Myb domain
SMARTSM007172.3E-1258105IPR001005SANT/Myb domain
PfamPF118315.5E-57513761IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDAADDPR  120
KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDGRHR KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT  240
TIEELEGKRR ADVEAQLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEAVR KRSKLMLPPP  300
QISDHELEEI AKMGYASDLL AENEELTEGS AATHEDRPAD QVKFPTTIEE LEGKRRADVE  360
AQLRKQDVAR NKIAQRQDAP AAILQANKLN DPEAVRKRSK LMLPPPQISD HELQEIAKMG  420
YASDLLAENE ELTEGSAATR ALLANYSQTP RQGMTPMRTP QRTPSGKGDA IMMEAENLAR  480
LRDSQTPLLG GENPELHPSD FTGVTPRKKE IQTPNPMLTP SMTPGGAGLT PRIGLTPSRD  540
GSSFSMTPKG TPFRDELHIN EDMDMHDNAK LERHRREEAK RSLRSGLTGL PQPKNEYQIV  600
PQLPPEESEE PEEKIEEDMS DRIAREKAEE EARQQALLKK RSKVLQRDLP RPPAASLEII  660
RNSLLSADGD KSSVVPPTPI EVADKMVREE LLKLLEHDNA KYPLDDKAEK KKGAKNRTNS  720
SASQILAIED FEEYELQEAD SMIKEEGEFL RVSMDHADKT LDDFIEARNR SVNDLIYLPT  780
QNAYGLSSVA ANAEKVASLQ VEMENARKKF EEDEKKAEHM KAKYKTYTKG HERRAETVWT  840
QIEATLKQIE IGGTEVECFK ALKRQEEMAA SFRKKNLQDE VVKQKETERK LQARYGNMSA  900
MVEKAEEIMV GFRAQALKKQ EDVEDSHKLK EAKLAGGEEE DVAIAMEASA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-13528983791Cell division cycle 5-like protein
5xjc_L1e-13528983791Cell division cycle 5-like protein
5yzg_L1e-13528983791Cell division cycle 5-like protein
5z56_L1e-13528983791Cell division cycle 5-like protein
5z57_L1e-13528983791Cell division cycle 5-like protein
5z58_L1e-13528983791Cell division cycle 5-like protein
6ff4_L1e-13528983791Cell division cycle 5-like protein
6ff7_L1e-13528983791Cell division cycle 5-like protein
6icz_L1e-13528983791Cell division cycle 5-like protein
6id0_L1e-13528983791Cell division cycle 5-like protein
6id1_L1e-13528983791Cell division cycle 5-like protein
6qdv_O1e-13528983791Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDGRHRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g013320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930570.0AY093057.1 Arabidopsis thaliana putative Myb DNA-binding protein (At1g09770) mRNA, complete cds.
GenBankAY5195530.0AY519553.1 Arabidopsis thaliana MYB transcription factor (At1g09770) mRNA, complete cds.
GenBankBT0088010.0BT008801.1 Arabidopsis thaliana At1g09770 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475824.10.0PREDICTED: cell division cycle 5-like protein isoform X3
RefseqXP_019094644.10.0PREDICTED: cell division cycle 5-like protein isoform X2
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A178WIY60.0A0A178WIY6_ARATH; CDC5
STRINGXP_010475824.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64532742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]