PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g012470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 23545.9 Da PI: 5.2686 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.8 | 2.9e-11 | 13 | 93 | 5 | 83 |
-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 lt dv++++rl lp + +++ ++++++++ + d s+ s+ v+l r+ s++y++++GW++F +a +Lk+gD++ + Csa17g012470.1 13 LTDIDVSSKNRLGLPLDKVNNLiistgVPIPRQGIQVEIVDNSN-SYWVNL--RQDSNGYFIGSGWSSFKDARQLKAGDVIRLD 93 7789***************6669999855667999999999655.5559**..**************************98776 PP | |||||||
2 | zf-CCCH | 25 | 3.4e-08 | 158 | 177 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G+rC++ H Csa17g012470.1 158 CPFHLKTGACRFGPRCSRVH 177 ******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-10 | 4 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-13 | 4 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.642 | 9 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-6 | 9 | 107 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.49E-10 | 13 | 104 | No hit | No description |
Pfam | PF02362 | 4.8E-9 | 13 | 94 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50103 | 12.671 | 152 | 180 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 158 | 177 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 7.4E-12 | 158 | 177 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 7.4E-12 | 177 | 197 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MNPSTNMMIE INLTDIDVSS KNRLGLPLDK VNNLIISTGV PIPRQGIQVE IVDNSNSYWV 60 NLRQDSNGYF IGSGWSSFKD ARQLKAGDVI RLDWQPQDYK FIFSMVLIVS WTIAYTISFC 120 LVCTLTQESK TLEMNNYENV SSAQQILENV VQEDKAHCPF HLKTGACRFG PRCSRVHFYP 180 SKSCTLLMKN MYNGLGIACE QDEGLEVE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g012470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005489 | 9e-58 | AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence. | |||
GenBank | AK226684 | 9e-58 | AK226684.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-54-F13. | |||
GenBank | CP002684 | 9e-58 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475717.1 | 1e-71 | PREDICTED: B3 domain-containing protein At1g08985-like | ||||
Swissprot | Q8GWU1 | 1e-39 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | R0HES1 | 1e-35 | R0HES1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010475717.1 | 4e-71 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 5e-42 | B3 family protein |