PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g010250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 677aa    MW: 74472.3 Da    PI: 5.3207
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g010250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.8e-10159214560
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l 
  Csa17g010250.1 159 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLA 214
                     9*****************************************99988877666555 PP
2bZIP_130.57.8e-10486541560
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  ++     l 
  Csa17g010250.1 486 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLA 541
                     9*****************************************99988877666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-15155219IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829157220IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.36E-10159210No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-9159214No hitNo description
PfamPF001702.8E-8159213IPR004827Basic-leucine zipper domain
CDDcd147032.26E-21160209No hitNo description
SMARTSM003381.2E-15482546IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829484547IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-9486541No hitNo description
PfamPF001702.8E-8486540IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.36E-10486537No hitNo description
CDDcd147032.26E-21487536No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MEKSSDSKLS DPIPNAASSD SKLSDPIPNA ADPTPPSSFH RRSRSDDMSM FMFMDPLSSG  60
APPSSDDLPS DDDLFSSFID VDSLTSNPNP FPNQSLSSNS ASGANPNPPP PQQSSSSRPR  120
HRHSNSVDAG CAMYAGEIMD AKKAMPPEKL SELWNIDPKR AKRILANRQS AARSKERKAR  180
YIQELERKVQ SLQTEATTLS AQLTLYQRDT NGLANENTEL KLRLQAMEQQ AQLRNALNEA  240
LRKEVERMKM ETGEISGNSD SFDMGMQQIQ YSSSTFMAIP PYHHGSMNGQ DMQQMHTSFN  300
NPMEMSNSQS VSDFLQNGRL QGLEISSNSS SLVKSEGPSL SANSKFSDPI PLPNNPNADP  360
TPPSSFHRRS RSDDMSMFMF MDPLSSGAPP SSDDLPSDDD LFSSFIDVDS LTSNPNPFPN  420
QSLSSNSASG ANPNPPPPQQ SSSSRPRHRH SNSVDAGCAM YAGEIMDAKK AMPPEKLSEL  480
WNIDPKRAKR ILANRQSAAR SKERKARYIQ ELERKVQSLQ TEATTLSAQL TLYQRDTNGL  540
ANENTELKLR LQAMEQQAQL RNALNEALRK EVERMKMETG EISGNSDSFD MGMQQIQYSS  600
STFMAIPPYH HGSMNGQDMQ QMHTSFNNPM EMSNSQSVSD FLQNGRLQGL EISSNSSSLV  660
KSEGPSLSAS ESSSAY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00129DAPTransfer from AT1G06850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g010250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4198520.0AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAY0624740.0AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBankBT0001020.0BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095274.10.0PREDICTED: transcription factor RF2b-like
SwissprotQ6S4P44e-79RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A4D6MK620.0A0A4D6MK62_VIGUN; Uncharacterized protein
STRINGXP_010475437.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-134basic leucine-zipper 52
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]