PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g009470.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 427aa MW: 47358.2 Da PI: 6.2981

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g009470.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.8e-10	215	271	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + Csa17g009470.1 215 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGMNV 271 9*******************************************9999877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-15	211	275	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	213	276	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-10	215	265	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-10	215	267	No hit	No description
Pfam	PF00170	8.7E-9	215	267	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.78E-24	216	265	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MDKEKSPAPP SGGLPPPSGR YSTFSPNATS FTMKAESSFP PPHLTPTGST SSSDATNRFS 60 HDISRMPDNP PKNLGHRRAH SEILTLPDDL SFDSDLGVVG AAADGPSFSD DTDEDLMYMY 120 LDMDKFNSSA TSTSQMGEPS EPAWRNELGG GSTSNLQSTP GSSSERPRIR HQHSQSMDGS 180 TSIKPEMLNE DVSGVDSKKA ISAAKLSELA LIDPKRAKRI WANRQSAARS KERKMRYIAE 240 LERKVQTLQT EATSLSAQLT LLQRDTNGMN VENNELKIRV QTMEQQVHLQ DALNEALKEE 300 VQHLKVLTGQ GTSNGASMMN YGSFGPNQQF YPNNQSMHTV LAAQQFQQLQ IQSQKQQQQQ 360 HQQQQQQQQH QFQFQQQQLY QLQQQQQRLQ QQEQQSGASE LRRPMPSSGQ KESVPSPDLE 420 AASTKD*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MDKEKSPAPP SGGLPPPSGR YSTFSPNATS FTMKAESSFP PPHLTPTGST SSSDATNRFS  60
HDISRMPDNP PKNLGHRRAH SEILTLPDDL SFDSDLGVVG AAADGPSFSD DTDEDLMYMY  120
LDMDKFNSSA TSTSQMGEPS EPAWRNELGG GSTSNLQSTP GSSSERPRIR HQHSQSMDGS  180
TSIKPEMLNE DVSGVDSKKA ISAAKLSELA LIDPKRAKRI WANRQSAARS KERKMRYIAE  240
LERKVQTLQT EATSLSAQLT LLQRDTNGMN VENNELKIRV QTMEQQVHLQ DALNEALKEE  300
VQHLKVLTGQ GTSNGASMMN YGSFGPNQQF YPNNQSMHTV LAAQQFQQLQ IQSQKQQQQQ  360
HQQQQQQQQH QFQFQQQQLY QLQQQQQRLQ QQEQQSGASE LRRPMPSSGQ KESVPSPDLE  420
AASTKD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g009470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ419854	0.0	AJ419854.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBank	AK229666	0.0	AK229666.1 Arabidopsis thaliana mRNA for bZip transcription factor AtbZip69, complete cds, clone: RAFL19-85-B03.
GenBank	BT028965	0.0	BT028965.1 Arabidopsis thaliana At1g06070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010475328.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_019095243.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-176	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	R0INM3	0.0	R0INM3_9BRAS; Uncharacterized protein
STRING	XP_010475328.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]