PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 362aa MW: 38676.9 Da PI: 7.6041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g009200.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	294	339	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s +++L +Av++Ik Lq Csa17g009200.1 294 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 339 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.656	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-14	291	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.58E-11	292	343	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-13	293	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-8	294	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-12	294	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MYQSSSSTSS SSHRSSLPGG GSGGGLIRYG SAPGSFLNSV VDEVIGGSNA RDFTGYNQPS 60 DNNFIGNFFA GADSSSLRSD STTCGVNSSS DGQKHNNNNK DVFLDRSYGG GFNHEISQHK 120 SNELGGGSGS GSGSYSLARQ RSSPADFFSY LAADKNNFAL NQPTSDYSPQ GGSSNAGRGH 180 SRLKSQLSFT SHDSLARINE VNETPVHDGS GHSFSAASFG AAATDSWDDG SGSIGFTVTR 240 PNKRSKDMDS GLFSQYSLPS DTSMNYMDNF MQLPEDSVPC KIRAKRGCAT HPRSIAERER 300 RTRISGKLKK LQDLVPNMDK QTSYSDMLDL AVQHIKGLQH QLQNLKKDQE NCTCGCSERQ 360 S*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MYQSSSSTSS SSHRSSLPGG GSGGGLIRYG SAPGSFLNSV VDEVIGGSNA RDFTGYNQPS  60
DNNFIGNFFA GADSSSLRSD STTCGVNSSS DGQKHNNNNK DVFLDRSYGG GFNHEISQHK  120
SNELGGGSGS GSGSYSLARQ RSSPADFFSY LAADKNNFAL NQPTSDYSPQ GGSSNAGRGH  180
SRLKSQLSFT SHDSLARINE VNETPVHDGS GHSFSAASFG AAATDSWDDG SGSIGFTVTR  240
PNKRSKDMDS GLFSQYSLPS DTSMNYMDNF MQLPEDSVPC KIRAKRGCAT HPRSIAERER  300
RTRISGKLKK LQDLVPNMDK QTSYSDMLDL AVQHIKGLQH QLQNLKKDQE NCTCGCSERQ  360
S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g009200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086106	0.0	AY086106.1 Arabidopsis thaliana clone 21406 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010475300.1	0.0	PREDICTED: transcription factor bHLH128-like
Swissprot	Q8H102	0.0	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A178W6Y0	0.0	A0A178W6Y0_ARATH; Uncharacterized protein
STRING	XP_010475300.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11777	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]