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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa17g008250.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
C3H |
Protein Properties |
Length: 410aa MW: 45262.9 Da PI: 8.3183 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa17g008250.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 34.4 | 3.6e-11 | 45 | 71 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+f++rtG C yG++C+++H+p
Csa17g008250.1 45 PGERDCQFYLRTGLCGYGSSCRYNHPP 71
5789*********************97 PP
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2 | zf-CCCH | 36.5 | 8e-12 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C +f++tG CkyG++Ck++H++
Csa17g008250.1 91 QPDCEYFLKTGACKYGSTCKYHHPK 115
789********************96 PP
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3 | zf-CCCH | 37.7 | 3.4e-12 | 135 | 160 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C++++rtGtC++G C+F+H++
Csa17g008250.1 135 GEKPCPYYLRTGTCRFGVACRFHHPQ 160
689*********************97 PP
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4 | zf-CCCH | 40.2 | 5.6e-13 | 261 | 285 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++Crff+ tGtCkyGd Ck++H+
Csa17g008250.1 261 DRPECRFFMNTGTCKYGDDCKYNHP 285
689*********************8 PP
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5 | zf-CCCH | 29.2 | 1.6e-09 | 306 | 331 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C +f+ +G+Ck+G++CkF H+
Csa17g008250.1 306 PGQPACGNFRSYGFCKFGPNCKFDHP 331
57899********************9 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.68 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-6 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 46 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 48 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 50 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 93 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 94 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-6 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.032 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-6 | 133 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 137 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.591 | 259 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-7 | 260 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 261 | 285 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 263 | 285 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 265 | 284 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 301 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-5 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.845 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-8 | 307 | 331 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MRPMSDTQLV QSSLVSIRSS DFNIQDAFSK MKVNDDESNP YPDRPGERDC QFYLRTGLCG 60 YGSSCRYNHP PNLPQGNNAY YKEELPERIG QPDCEYFLKT GACKYGSTCK YHHPKDRNGA 120 EPVLFNVIGL PMRQGEKPCP YYLRTGTCRF GVACRFHHPQ PDNGHSTAYG MPSFPSTGLQ 180 YASGLTMMST YGTLPRPQVP QSYVPIMVSP SQGLFPPQGW GTYMAAPNPM YDVKNQPYYS 240 GSSASVPVAM TLNRGLPESS DRPECRFFMN TGTCKYGDDC KYNHPGVRIS PPPPSLINPF 300 VLPARPGQPA CGNFRSYGFC KFGPNCKFDH PVLPYPGLTM SASLPTPYAS PVLTHQRISP 360 SPSRSDSKSL SNGKPDVKKQ SSETEKPECD SEQLNNSKVH DLSEKSSST*
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Functional Description ? help
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Source |
Description |
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493434 | 0.0 | AB493434.1 Arabidopsis thaliana At1g04990 mRNA for hypothetical protein, partial cds, clone: RAAt1g04990. |