PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g001990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 270aa    MW: 30886.2 Da    PI: 10.3622
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g001990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-144589147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   Csa17g001990.1 45 RENWTEQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 89
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-163995IPR009057Homeodomain-like
PROSITE profilePS5129415.7664094IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-74395IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-174392IPR006447Myb domain, plants
SMARTSM007172.0E-114492IPR001005SANT/Myb domain
PfamPF002495.3E-124589IPR001005SANT/Myb domain
CDDcd001677.87E-94790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MNLAGFNTLT HTATTIPVTA RKNTMSFSED QTKKIRKPYT ITKSRENWTE QEHDKFIEAL  60
HLFDRDWKKI EAFVGSKTVI QIRSHAQKYF LKVQKNGTNE HLPPPRPKRK ANHPYPQKAP  120
KSVALTSSNA LLQHDYLYSA NSRPVISSTP KHGLLRCTPN PVIKEELGVP ENCCSTSTSR  180
DKQRTRTLTE KNDQESCGKP HRVMPNFAEV YSFIGSVFDP KTTGHVHRLK QMDPINLETV  240
LFLMRNLSVN LRSPEFEEQR KLISSYNAR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g001990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474753.10.0PREDICTED: protein REVEILLE 3-like
SwissprotQ6R0H01e-167RVE3_ARATH; Protein REVEILLE 3
TrEMBLR0GTE51e-180R0GTE5_9BRAS; Uncharacterized protein
STRINGXP_010474753.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.11e-169MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]