PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g001810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 345aa    MW: 39028.2 Da    PI: 6.5831
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g001810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.4e-12204229126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF H+
  Csa17g001810.1 204 YQPDICKDYKETGYCGYGDSCKFLHD 229
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9202235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009203231IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8203230IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9204229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13204234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.5E-13267321IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.4E-8279321No hitNo description
SuperFamilySSF578502.17E-13279322No hitNo description
CDDcd001623.02E-9280321No hitNo description
SMARTSM001849.2E-5280317IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.63280318IPR001841Zinc finger, RING-type
PROSITE patternPS005180295304IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSDSGEPKPS QQEEEFQPQP QPAAQESQSQ QVCTFFKKPT KAKNIRKRTV DEDEEDGDSK  60
SQTSILQNLK KVAKPDSKLY FSSGPSKSST TTSEAPEKPV FHYDSSKEIQ VQNDSRATAT  120
LETETDFNQD ARAIRERVLK KADESLKGNK KKVSDEKLYT GIHGYTDHKA GFRREQTISS  180
EKAGGSHGPL RASAHIRVSA RFDYQPDICK DYKETGYCGY GDSCKFLHDR GDYKPGWQIE  240
KEWEEAEKVR KRNKAMGVED EDDEAGNDSE EDDDALPFAC FICREPFVDP VVTKCKHYFC  300
EHCALKHHTK NKKCFVCNQP TMGIFNAAHE IKKRMAEERS KAEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-663134413326RING finger protein 113A
5z58_M2e-663134413326RING finger protein 113A
6ff4_t2e-663134413326RING finger protein 113A
6ff7_t2e-663134413326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g001810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474729.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_010474731.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGXP_010474729.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein