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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa17g001510.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
B3 |
Protein Properties |
Length: 356aa MW: 39900.1 Da PI: 6.1768 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa17g001510.1 | genome | CSGP | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 98 | 5.8e-31 | 53 | 155 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88
f+kv tpsdv+k++rlv+pk++ae++ ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ +
Csa17g001510.1 53 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDesE 147
89***************************966677889*************************************************54344235 PP
EE..EEEE CS
B3 89 efelvvkv 96
+ +l++ +
Csa17g001510.1 148 RSKLYIDW 155
55555555 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MDLSLAPTAT TSSDQEQDRE QELTSNIGAS SSSGTGNNLP MMMLPPPEKE HMFDKVVTPS 60 DVGKLNRLVI PKQHAERYFP LDSSNNQNGT LLNFQDRNGK MWRFRYSYWN SSQSYVMTKG 120 WSRFVKEKKL DAGDIVSFQR GIGDESERSK LYIDWRHRPD MSLVQAHQFG NFGFNFNFPT 180 TSQYSNRFLP LPEYNAVPIH RSLNIGNHQR SYYNNNNQRQ EFVGYGTYGN LAGRCYYTGS 240 PLDQRNIVGS EPLVIESVPV VPGRLTPVML PPPPSTAGKR LRLFGVNMEC GNDYSQQEES 300 WVMPRGEIGA SSSSSSALRL NLSTDHDDDG DDGDGGDDDQ FAKKGKSSFS LNFNP*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 5e-63 | 47 | 161 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-63 | 47 | 161 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC007323 | 0.0 | AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence. |
GenBank | AF196566 | 0.0 | AF196566.1 Arabidopsis thaliana chromosome I, partial sequence. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
GenBank | FJ873733 | 0.0 | FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds. |