PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g001000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 390aa    MW: 44217.2 Da    PI: 7.6409
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g001000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.89.7e-4141332128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     p+GfrF+Ptdee+v++yL++k  +++  +++evi++vdi++v+PwdLp k ++k+++  wyfF  ++ ky++g++ +r+tksg+Wk+tgk+ +++
  Csa17g001000.1   4 PVGFRFRPTDEEIVDHYLRPKNLETNtSRVDEVISTVDICSVDPWDLPsKsRIKSRDGVWYFFGVKEIKYNRGDQLRRTTKSGVWKKTGKTMSII 98 
                     89*****************99665553778889**************95347888888************************************* PP

             NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +k   ++e++g k++Lvf    ++ g+k+dWvmhey++
  Csa17g001000.1  99 RKrrgNNEKIGEKRVLVFK---HRGGSKSDWVMHEYHA 133
                     998888889*********7...77889*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.6513153IPR003441NAC domain
SuperFamilySSF1019412.48E-443153IPR003441NAC domain
PfamPF023653.1E-234132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MMNPVGFRFR PTDEEIVDHY LRPKNLETNT SRVDEVISTV DICSVDPWDL PSKSRIKSRD  60
GVWYFFGVKE IKYNRGDQLR RTTKSGVWKK TGKTMSIIRK RRGNNEKIGE KRVLVFKHRG  120
GSKSDWVMHE YHATPLSPPN QMMKYTLCKV EFKGEESEIS SSSTGSEIEN NHSLIPLMNY  180
SGELSPRSEG SSYCQGVQNP SQLSSGFLGV QPETQLEDAV RRAINSISTD DWNSLFNDDD  240
EQSKIVSVQE DCSDYRPPKP LTGVFDDHSS DDNDTDSDSI SATTNSIETS STCDSFGSLN  300
HRIDQSKTQQ SPDSTIKLVS SAQEVSQAMG QGTVTRENNM GEDRIKKKRA SLIHRMIQRL  360
VKKFHQFSHE NNKRDQRTHR FVLSKFVEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-22413116138Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00122DAPTransfer from AT1G02230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g001000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474630.10.0PREDICTED: NAC domain-containing protein 4-like
SwissprotO819131e-155NAC4_ARATH; NAC domain-containing protein 4
TrEMBLD7KB641e-156D7KB64_ARALL; Predicted protein
STRINGXP_010474630.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.11e-139NAC domain containing protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]