PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g053490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 392aa MW: 41962.5 Da PI: 4.8909 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 127.7 | 4.9e-40 | 157 | 249 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 f+rlw+e+Dei++LqG+idfka+tgksp++d ++ y+f+kk isf+vsk+q+++K+r+L+kK+ +k+ k +g epsf+k+hdqk++el+k+iWg Csa16g053490.1 157 FHRLWTEDDEIAVLQGMIDFKADTGKSPYEDSNGYYDFIKKDISFEVSKNQFMDKLRSLRKKYMGKEVK--NGVEPSFAKPHDQKAYELAKIIWG 249 89***************************************************************9988..***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.0E-32 | 157 | 249 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MTKKLNPLED PPSASSSDDD DIETSEAGEP SDDSSSSEDD ESSKAPIKSL ASAAAAASSK 60 STVVAESDSG SETETDSDSE STNPPNSGSG KTISVNLKKK EDPTSSAALA LPAAKSGGTK 120 RPASEAAAAT ASATANKRVK KVTSGGGEEE SVKKPGFHRL WTEDDEIAVL QGMIDFKADT 180 GKSPYEDSNG YYDFIKKDIS FEVSKNQFMD KLRSLRKKYM GKEVKNGVEP SFAKPHDQKA 240 YELAKIIWGP EGIATESNVK SNGVSKKSKA KTKLGSVKQE LVYAGSSPNG KMDEDGDDDD 300 DMDLVVHGGG GSRKSDLFES SSLVRMVAGC GVDEYYVKRQ WSLLPVETKK VVEEKLKLLQ 360 AKELEFVMEK TDFLHEVTSM IVEASKNKKS H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g053490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010473386.1 | 0.0 | PREDICTED: probable transcription factor At1g61730 | ||||
Swissprot | Q9SYA9 | 1e-161 | STKLD_ARATH; Probable transcription factor At1g61730 | ||||
TrEMBL | R0GHD8 | 1e-166 | R0GHD8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010473386.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 6e-94 | DNA-binding storekeeper protein-related transcriptional regulator |