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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g053010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 329aa MW: 36903.2 Da PI: 8.4478 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.8e-53 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ Csa16g053010.1 16 LPPGFRFHPTDEELVVHYLKKKATSVPLPV-SIIAEIDLYKFDPWELPSKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTC 109 79****************************.89***************9888999**************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg ktdW+mheyrl Csa16g053010.1 110 NSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRL 142 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-64 | 8 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.467 | 16 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MENMGDSSIG PGHPHLPPGF RFHPTDEELV VHYLKKKATS VPLPVSIIAE IDLYKFDPWE 60 LPSKASFGEH EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL 120 VFYGGKPPKG IKTDWIMHEY RLTDGNLSTT AKPPGIATTR KNSLRLDDWV LCRIYKKNSS 180 QRPTMERVLL REDLMEGMLS KSSANSSSTS VLDNNENNNN NNNNNNNEEH FFDGMVVSSD 240 KRSLCGQYRM GHEASGSSSF GYFLSSKRFH HTGDLNNDNY NVSFVSMLSE IPQSSGFHAN 300 GVMDTTSSLG DHGDLRQAFQ LPNMNWHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-73 | 16 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-73 | 16 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-73 | 16 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-73 | 16 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-73 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-73 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-73 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-73 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-73 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-73 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-73 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-73 | 16 | 180 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-73 | 16 | 182 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-73 | 16 | 182 | 17 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g053010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087839 | 0.0 | AY087839.1 Arabidopsis thaliana clone 38858 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010473311.1 | 0.0 | PREDICTED: NAC transcription factor 25-like | ||||
Swissprot | Q8GY42 | 0.0 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | D7KW47 | 0.0 | D7KW47_ARALL; ANAC025 | ||||
TrEMBL | R0HVK8 | 0.0 | R0HVK8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010473311.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 0.0 | NAC domain containing protein 25 |