PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g051270.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 832aa MW: 94029.8 Da PI: 6.929

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g051270.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.4	3.5e-11	57	128	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eY++++GF+ + k++g++ r+fvCs + ++++ + +C+a++++++ ++kw+v+k+++eH+H la Csa16g051270.1 57 SFYDEYSRQLGFTSKSLP----KTDGSVSVREFVCSSKRSKRRLAE--------------SCDAMVRIEMIGHDKWVVAKFVKEHTHGLA 128 5*********876654....55899****98877666554..............5************************997 PP
2	FAR1	24.9	6.5e-08	363	403	50	90
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++r++ +C+a++++++ ++kw+v+k+++eH+H la Csa16g051270.1 363 NSKRSKRRLAESCDAMVRIEMIGHDKWVVAKFVKEHTHGLA 403 445566667789**************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-6	58	128	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.398	279	315	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.6E-9	284	313	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-8	290	317	IPR006564	Zinc finger, PMZ-type
Pfam	PF03101	4.2E-5	363	403	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.398	554	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.6E-9	559	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-8	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence Send to blast
MDIHLVEEGL SMGNHEMGDD GDAEPNNIEN SLGVQDEIGI AEPCVGMEFS SEKEAKSFYD 60 EYSRQLGFTS KSLPKTDGSV SVREFVCSSK RSKRRLAESC DAMVRIEMIG HDKWVVAKFV 120 KEHTHGLASP NTLHCLRPRR HFANSEKSSY QQGVNNVPSG MMYVSMDVFP SQGYSGSFFD 180 GYVNQQTTLP MFFRLYERAM ENWFEMETEA DLDTVNTPPV LKTPSPMENQ AANLFTRKIF 240 GKFQEELVET FAHTANRIED DGTTSTFRVA KFEDDNKAYI VTFCYPEMRA NCSCQMFEHC 300 GILCRHVLTV FTVTNIPTLP PHYILRRWTR NAKSMGELDD HVSENGHDSL IHRYNHLCRE 360 AINSKRSKRR LAESCDAMVR IEMIGHDKWV VAKFVKEHTH GLASPNTLHC LRPRRHFANS 420 EKSSYQQGVN NVPSGMMYVS MDVFPSQGYT GSFFDGYVNQ QTTLPMFFRL YERAMESWFE 480 METEADLDTV NTPPVLKTPS PMENQAANLF TRKIFGKFQE ELVETFAHTA NRIEDDGTTS 540 TFRVAKFEDD NKAYIVTFCY PEMRANCSCQ MFEHCGILCR HVLTVFTVTN IPTLPPHYIL 600 RRWTRNAKSM GELDEHVSEN GHDSLIHRYN HLCREAIKYA EGGAVTAEAY NIALGALREG 660 GKKVSVVRKN IGRAVPPSAH GSGGKTSLSA ADTTPLLWPR QDEMIRRFNL NDGGARAQSV 720 ADLNLPRMAP VSLHQDDGAP ENMVALPCLK SMTWVMESKN TMPGGRVAVI NLKLHDYRKF 780 PSPDMEVKFQ LSSVTLEPML SSMAYISKQL SSPANRVAVI NLKVSFKTLR L*

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence Send to blast

MDIHLVEEGL SMGNHEMGDD GDAEPNNIEN SLGVQDEIGI AEPCVGMEFS SEKEAKSFYD  60
EYSRQLGFTS KSLPKTDGSV SVREFVCSSK RSKRRLAESC DAMVRIEMIG HDKWVVAKFV  120
KEHTHGLASP NTLHCLRPRR HFANSEKSSY QQGVNNVPSG MMYVSMDVFP SQGYSGSFFD  180
GYVNQQTTLP MFFRLYERAM ENWFEMETEA DLDTVNTPPV LKTPSPMENQ AANLFTRKIF  240
GKFQEELVET FAHTANRIED DGTTSTFRVA KFEDDNKAYI VTFCYPEMRA NCSCQMFEHC  300
GILCRHVLTV FTVTNIPTLP PHYILRRWTR NAKSMGELDD HVSENGHDSL IHRYNHLCRE  360
AINSKRSKRR LAESCDAMVR IEMIGHDKWV VAKFVKEHTH GLASPNTLHC LRPRRHFANS  420
EKSSYQQGVN NVPSGMMYVS MDVFPSQGYT GSFFDGYVNQ QTTLPMFFRL YERAMESWFE  480
METEADLDTV NTPPVLKTPS PMENQAANLF TRKIFGKFQE ELVETFAHTA NRIEDDGTTS  540
TFRVAKFEDD NKAYIVTFCY PEMRANCSCQ MFEHCGILCR HVLTVFTVTN IPTLPPHYIL  600
RRWTRNAKSM GELDEHVSEN GHDSLIHRYN HLCREAIKYA EGGAVTAEAY NIALGALREG  660
GKKVSVVRKN IGRAVPPSAH GSGGKTSLSA ADTTPLLWPR QDEMIRRFNL NDGGARAQSV  720
ADLNLPRMAP VSLHQDDGAP ENMVALPCLK SMTWVMESKN TMPGGRVAVI NLKLHDYRKF  780
PSPDMEVKFQ LSSVTLEPML SSMAYISKQL SSPANRVAVI NLKVSFKTLR L*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g051270.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317350	0.0	AK317350.1 Arabidopsis thaliana AT2G27110 mRNA, complete cds, clone: RAFL24-16-J02.
GenBank	AY057491	0.0	AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds.
GenBank	BT002690	0.0	BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019093768.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	R0HMV5	0.0	R0HMV5_9BRAS; Uncharacterized protein
STRING	XP_010417857.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]