PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g051210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family EIL
Protein Properties Length: 403aa    MW: 46321.6 Da    PI: 5.0256
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g051210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3160.22.5e-49501461100
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     +el+krmw+d+m+lkrlke++ + +  ke+ ++ +k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WW
  Csa16g051210.1  50 DELEKRMWRDKMRLKRLKEQQSK-C--KEEGVDGSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWW 141
                     79******************997.5..66669*************************************************************** PP

                     XXXXX CS
            EIN3  96 kekve 100
                     k+kv+
  Csa16g051210.1 142 KDKVS 146
                     ***97 PP
2EIN333.48.6e-11147257272354
                     XXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXX...........................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.X CS
            EIN3 272 pkvtlsceqkedve.gkkeskikhvqavktta...........................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgse 338
                      ++ +++ +++dve  +ke+   +++++k +                            ++++ rkrk++++ + +++++ + +tc++ q+++ +
  Csa16g051210.1 147 GSLLINDCSEYDVEgFEKEQPSFDMEERKPEIvmmnpptsfgiakmqhfpikeevatigNLEFSRKRKQNNDMNVMIMDRPAGYTCENGQCPHGK 241
                     577889999*****87777777899999987799************************************************************* PP

                     XXXXXXXXXXXXXXXX CS
            EIN3 339 telifadknsisqney 354
                     ++l+f+d++s++++++
  Csa16g051210.1 242 MNLGFQDRSSRDNHQM 257
                     **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.3E-4450146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MMMFNEMGMY GNMDFFPTST PLDVCPLPQA EQEPVLVEDV DYTDDEMDVD ELEKRMWRDK  60
MRLKRLKEQQ SKCKEEGVDG SKQRQSQEQA RRKKMSRAQD GILKYMLKMM EVCKAQGFVY  120
GIIPEKGKPV TGASDNLREW WKDKVSGSLL INDCSEYDVE GFEKEQPSFD MEERKPEIVM  180
MNPPTSFGIA KMQHFPIKEE VATIGNLEFS RKRKQNNDMN VMIMDRPAGY TCENGQCPHG  240
KMNLGFQDRS SRDNHQMVCP YRDNRVAYGA SKFHVGEMRP QQSIDLSVFG VPENGQKMIT  300
ELMAMYDRNV QSSQTPPPLM VNQSMTLDAK PAQNQQLSFN SGNQMFMQQG TNSMVSNRCQ  360
MVFDSTPFDM AAFDYRDDWQ TGAMEGMGKQ QQQQQRGASI WF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g051210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0056230.0AC005623.3 Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence.
GenBankAF0042130.0AF004213.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) mRNA, complete cds.
GenBankAY0651910.0AY065191.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050; T20P8.10) mRNA, complete cds.
GenBankBT0033440.0BT003344.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473094.11e-180PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ9SLH01e-147EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLD7LFJ41e-151D7LFJ4_ARALL; Uncharacterized protein
STRINGXP_010473094.11e-179(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1873538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-149ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  4. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  5. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  6. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  7. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  8. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]