PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g049360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 244aa MW: 27248.6 Da PI: 4.5226 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 8e-17 | 76 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Csa16g049360.1 76 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 127 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.971 | 1 | 41 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-4 | 2 | 47 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-10 | 6 | 41 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-9 | 7 | 42 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.1E-12 | 76 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-18 | 76 | 137 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.36E-15 | 76 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 77 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.241 | 77 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-25 | 77 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MNADSSSAVY LGAYDEEEAA ARAYDLAALK YWGRDTLLNF PLPTYEEDLK EMESHSKEEY 60 IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAAIAYDI 120 AAIEYRGLNA VTNFDVSRYL NSSAAVANPD KLDPDSKPIR NPNNHEPESS DDNESPKSEE 180 IVEPSTSPEA MQTRRSFPDD IQTYFGCQDS GKVGAEEDDV IFGGFNSFIN PGFYNEFDHD 240 HGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g049360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352786 | 1e-159 | AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019093442.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 isoform X2 | ||||
Swissprot | A0JPZ8 | 1e-115 | AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A1P8ATD6 | 1e-130 | A0A1P8ATD6_ARATH; Integrase-type DNA-binding superfamily protein | ||||
STRING | XP_010472844.1 | 1e-175 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-117 | AP2 family protein |