PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g049360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 244aa    MW: 27248.6 Da    PI: 4.5226
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g049360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18e-1776127155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Csa16g049360.1  76 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 127
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.971141IPR001471AP2/ERF domain
SMARTSM003802.0E-4247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-10641IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-9742IPR016177DNA-binding domain
PfamPF008477.1E-1276127IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-1876137IPR016177DNA-binding domain
CDDcd000181.36E-1576137No hitNo description
Gene3DG3DSA:3.30.730.101.2E-1777136IPR001471AP2/ERF domain
PROSITE profilePS5103218.24177135IPR001471AP2/ERF domain
SMARTSM003801.1E-2577141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNADSSSAVY LGAYDEEEAA ARAYDLAALK YWGRDTLLNF PLPTYEEDLK EMESHSKEEY  60
IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAAIAYDI  120
AAIEYRGLNA VTNFDVSRYL NSSAAVANPD KLDPDSKPIR NPNNHEPESS DDNESPKSEE  180
IVEPSTSPEA MQTRRSFPDD IQTYFGCQDS GKVGAEEDDV IFGGFNSFIN PGFYNEFDHD  240
HGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g049360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527861e-159AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019093442.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 isoform X2
SwissprotA0JPZ81e-115AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A1P8ATD61e-130A0A1P8ATD6_ARATH; Integrase-type DNA-binding superfamily protein
STRINGXP_010472844.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-117AP2 family protein