PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g049230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 377aa    MW: 42978.4 Da    PI: 7.2526
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g049230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.5e-53171461128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+ +yLkkkv+ ++++l +vi+evd++k+ePw+L++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++
  Csa16g049230.1  17 VPPGFRFHPTEEELLYYYLKKKVSYEPIDL-DVIREVDLNKLEPWELKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSI 110
                     69****************************.9***************952444443456************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++++gl+ktLvfy+grap+g+kt+W+mheyrl
  Csa16g049230.1 111 HLNSSKKIGLRKTLVFYTGRAPHGQKTEWIMHEYRL 146
                     **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-5910166IPR003441NAC domain
PROSITE profilePS5100557.76617166IPR003441NAC domain
PfamPF023653.2E-2718146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW  60
ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKSI HLNSSKKIGL  120
RKTLVFYTGR APHGQKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFHHEQDQD  180
HHHHHHHQYI STTNDHDHHH HIDSNSNNHS SLIPHPLDHH HHHIGRQIHM PLHEFANTLS  240
HGSMHLPQLF SPDSAVAAAA AAAATQPFVS SINTTDIECS QNLLRLTSNN NYGGDWSFLD  300
KLLTTTNMNQ QQQQQQVQNH QAKCFGDLSN NDNNDQAVVT HDHLGNSNGG SSSSPVNQRF  360
PFHYLGNDAN LLKFPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-501416814167NO APICAL MERISTEM PROTEIN
1ut4_B4e-501416814167NO APICAL MERISTEM PROTEIN
1ut7_A4e-501416814167NO APICAL MERISTEM PROTEIN
1ut7_B4e-501416814167NO APICAL MERISTEM PROTEIN
3swm_A4e-501416817170NAC domain-containing protein 19
3swm_B4e-501416817170NAC domain-containing protein 19
3swm_C4e-501416817170NAC domain-containing protein 19
3swm_D4e-501416817170NAC domain-containing protein 19
3swp_A4e-501416817170NAC domain-containing protein 19
3swp_B4e-501416817170NAC domain-containing protein 19
3swp_C4e-501416817170NAC domain-containing protein 19
3swp_D4e-501416817170NAC domain-containing protein 19
4dul_A4e-501416814167NAC domain-containing protein 19
4dul_B4e-501416814167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g049230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107930.0AC010793.3 Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472822.10.0PREDICTED: protein SOMBRERO-like
RefseqXP_010472823.10.0PREDICTED: protein SOMBRERO-like
SwissprotQ9MA170.0SMB_ARATH; Protein SOMBRERO
TrEMBLR0GHU80.0R0GHU8_9BRAS; Uncharacterized protein
STRINGXP_010472822.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66532542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-173NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]