PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g047520.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 305aa    MW: 34673.1 Da    PI: 8.1728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g047520.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65.1e-09120140526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G C++Gd+C FaHg
  Csa16g047520.1 120 ACPEFRK-GSCRRGDSCEFAHG 140
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.5E-6115141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507116142IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-7120140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5120142IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.296150174IPR000571Zinc finger, CCCH-type
SMARTSM0035627150173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MMIGENNKRR HPTIHIPQWD SINDPTCTIS LPFSNGVNDH PHSPSPFLDS FSSLYRYLPS  60
NELTNDSDES SLTDEFRMYE FKIRRCARGG SHDWTECPFA HPGEKARRRD PRKFHYSGTA  120
CPEFRKGSCR RGDSCEFAHG VFECWLHPSR YRTQPCKDGT SCRRRICFFA HTTEQLRVLP  180
CSLDPDLGFF SSKSGLATSP TSILVSPQSE SPPLSPRTGE LIASMRKMQL NGGCPWSSPM  240
RSGVRLPFSS SLRPIQAPTW PRIREFEIWE SEREEEAPAM EFVESGKELR AKMYAKLSRE  300
NSLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g047520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053950.0AC005395.3 Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete sequence.
GenBankAF3705900.0AF370590.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g25900; F17H15.7) mRNA, complete cds.
GenBankAF3754030.0AF375403.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankAK1172720.0AK117272.1 Arabidopsis thaliana At2g25900 mRNA for putative Cys3His zinc finger protein ATCTH (ATCTH), complete cds, clone: RAFL16-82-I02.
GenBankAK2288680.0AK228868.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-19-E22.
GenBankAY1294680.0AY129468.1 Arabidopsis thaliana At2g25900/F17H15.7 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472617.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotO823071e-177C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A178VMZ51e-175A0A178VMZ5_ARATH; ATTZF1
STRINGXP_010472617.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-151C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]