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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa16g046430.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | B3 | ||||||||
| Protein Properties | Length: 2233aa MW: 253365 Da PI: 6.6883 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 45 | 2e-14 | 844 | 927 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
fk l + s+ +++p f+ ++ +g e+kt l++ s ++Wevk+ +++ +t+GWkeF+ a++L+ gD+vvF+ ++++ f +v
Csa16g046430.1 844 FKPL--LPGFYSH-VTIPVAFLLKNvKGH--EQKTAELRSeASKKTWEVKI--HGQR----ITDGWKEFAVAHDLRIGDIVVFRQESDMAF--HV 925
5666..5566666.99******9**6444..4569999995566*******..6666....9**********************6666777..77 PP
EE CS
B3 95 kv 96
++
Csa16g046430.1 926 TM 927
65 PP
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| 2 | B3 | 73.1 | 3.4e-23 | 976 | 1069 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
+ +++++l +rl +p++f++e+g++++++ ++l++e+grsW+v l+ +++ g ++++GW++F++an+L++g f++Fkl++r +++lv+++
Csa16g046430.1 976 ANITASTLLYDRLNFPRSFVRENGLDTRCGEIVVLMNEKGRSWTVDLRGKRSCGIAYIKRGWRKFCQANELRAGSFFTFKLIQR-GRTLVLRL 1067
56788888899************************************88888888***************************95.55567776 PP
E- CS
B3 97 fr 98
+
Csa16g046430.1 1068 SS 1069
65 PP
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| 3 | B3 | 54.5 | 2.1e-17 | 1126 | 1219 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
+++s++ k +rl+lp +f++ g++k++ ++++ d++g +W+ l+++kk r+ l +GW eF++an++k g++v+++l+++ ++ v+k+
Csa16g046430.1 1126 LTLTSYNVKCSRLTLPIHFTKVSGIVKAK--KMSFLDKHGVKWSTDLRFDKKHLRMRLVGGWIEFCDANHVKIGESVMLELIWEAHESSVLKF 1216
5679****************888999655..8**************************************************99777788888 PP
E-S CS
B3 97 frk 99
++k
Csa16g046430.1 1217 CSK 1219
876 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF81383 | 9.03E-6 | 58 | 101 | IPR001810 | F-box domain |
| Gene3D | G3DSA:1.20.1280.50 | 9.2E-4 | 63 | 101 | No hit | No description |
| Pfam | PF00646 | 0.0053 | 66 | 101 | IPR001810 | F-box domain |
| SMART | SM00256 | 0.29 | 70 | 111 | IPR001810 | F-box domain |
| Pfam | PF00646 | 6.3E-4 | 460 | 496 | IPR001810 | F-box domain |
| SMART | SM00256 | 1.8 | 464 | 505 | IPR001810 | F-box domain |
| Pfam | PF03478 | 1.6E-6 | 717 | 755 | IPR005174 | Domain unknown function DUF295 |
| PROSITE profile | PS50863 | 11.773 | 840 | 931 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 6.8E-21 | 841 | 943 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 7.25E-14 | 842 | 928 | No hit | No description |
| SuperFamily | SSF101936 | 1.43E-16 | 842 | 937 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 9.5E-20 | 843 | 931 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 4.9E-10 | 853 | 924 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.7E-21 | 966 | 1068 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 3.34E-19 | 968 | 1068 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 7.46E-20 | 973 | 1067 | No hit | No description |
| PROSITE profile | PS50863 | 15.016 | 973 | 1071 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 5.3E-29 | 974 | 1071 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.4E-21 | 975 | 1069 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.0E-18 | 1117 | 1219 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 4.51E-19 | 1119 | 1222 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 7.78E-16 | 1122 | 1217 | No hit | No description |
| SMART | SM01019 | 9.9E-19 | 1123 | 1220 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.042 | 1123 | 1219 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 4.1E-17 | 1124 | 1219 | IPR003340 | B3 DNA binding domain |
| Pfam | PF00646 | 0.0047 | 1233 | 1270 | IPR001810 | F-box domain |
| SMART | SM00256 | 25 | 1237 | 1280 | IPR001810 | F-box domain |
| Pfam | PF00646 | 0.0033 | 1644 | 1679 | IPR001810 | F-box domain |
| SMART | SM00256 | 2.4 | 1648 | 1690 | IPR001810 | F-box domain |
| Pfam | PF03478 | 1.7E-6 | 1925 | 1975 | IPR005174 | Domain unknown function DUF295 |
| Pfam | PF00646 | 0.0011 | 2022 | 2058 | IPR001810 | F-box domain |
| SMART | SM00256 | 2.6 | 2026 | 2069 | IPR001810 | F-box domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 2233 aa Download sequence Send to blast |
MAPRKKTPNM IWVRKSQQPE NMAKPATEET NKSLLDCSPL LEELPQSSNS VAEQPATKEQ 60 TLSKLDWSRL PEELLHIISD NLEDCFDVIH ARSVCHPWRS IFPFPSCLLG TSYSLPYFSK 120 FPRKSKGYCT LEKFPMFLFR VLAPAVGLPS EFFVGGINRD KSVKALPSPF QCSVKVNIPD 180 SEPTLMNVLD CQILPLGFQY RMVGWDPQSL ATSFRGVASL PLGEGEFVVL IGYSHNLLVL 240 TSADMRWMRL EKTSRADCKD IVTFRGRFYA VFLNGDVFVI DPYTLEATPL VPSERLNSQN 300 YLVPSGNDEL FLVEMIIVRG SVIDFSKLAC RVSRLDEEAG EWVVVNDLGG RVLLIGQPGN 360 SCCSARELPD GCGVSENSML FTNEPFGSTY CYKYGVDTGN AEDDLNFWRS SKETCVTIFR 420 TSPMVAFLCI EHKNPFAAVS FCLNQANMAK KEKISSLYPD WSQLPDELQQ VISKKLEDYC 480 FDVVHARSVC RTWRSVFPFP SCLLRPSYSL PSFPGFHIED EDSCTLEMVP LFLFRIRTPP 540 PAANVVWPSV YLLGAIGRDE SDDHMKLLPS PLQCSVKLNI PESEPILMNM LYCQIIPLGH 600 QYRVIGWGPQ ELTLYHKSVV LLPTRIRCAS HTHILERFYA SFEAREIVVI DPYSLEVTPM 660 MPSQPLLSGD YLIPSGDDEL FLVENFYPVP VADEIDFNRF TCRVSRLDEE AGKWVVVSVL 720 GDRVLFLGHF GNVCCSAKEL PDGCGVTGNS ILFTNDRNVT FAYKYGLHTG RAEDELNIWR 780 FSREKRVTIL STSPVVALRV DDRSENLALA PADVSPSEFF LGYSETKKRL RDLGTLIMAS 840 QHFFKPLLPG FYSHVTIPVA FLLKNVKGHE QKTAELRSEA SKKTWEVKIH GQRITDGWKE 900 FAVAHDLRIG DIVVFRQESD MAFHVTMLGP SCCEIQYVSC LNDHNNLGKI QRKKRVRKNP 960 SREPESSSLD PSCFVANITA STLLYDRLNF PRSFVRENGL DTRCGEIVVL MNEKGRSWTV 1020 DLRGKRSCGI AYIKRGWRKF CQANELRAGS FFTFKLIQRG RTLVLRLSSK ETEANEVESL 1080 STEQESDEER SQDGISLQQN SQRKERKGTL IRKDSYSASQ NRYVTLTLTS YNVKCSRLTL 1140 PIHFTKVSGI VKAKKMSFLD KHGVKWSTDL RFDKKHLRMR LVGGWIEFCD ANHVKIGESV 1200 MLELIWEAHE SSVLKFCSKV SKQQPCQSPS VPDWSLLPQE LLHLIAKDLE DEEYCFDVVH 1260 ARSVCTSWRS SFPFPSCLLR PSYSLPTFSD ESKVLCTVEK IPLFLFRVKT PAVSPSVFYL 1320 GDLGRDNSRD HMELPSPLQC SVRMQLPGSD PTLMNMLDCQ IISLGHQYRV IGWDPESWTS 1380 PYRGVALLPL NKEGGGEDFV VILNFTNDLV VFRSEETRWV RLGKITDTSC QKVLTFRGRF 1440 YAAYLNGDIF VIDPYSLEAT LMNPADHFSS INYLVQSGND ELFLVEATIP QAEVVEVSRL 1500 TCRVSSLDED AGEWDVVSDF EDRVLFIGEQ GNVTCSAKEL PDGCGVSGNS MLFTDWPGDA 1560 IYFYKYGVPT EYAEDDLNFW RLSREYRVKI LNKSPPVVNH VLVVCVETTS LVNAYQFSSS 1620 YKFRNHTTMA TRKKTSSSSS MLPNWSLLPE ELLQIVSKYV EDCFDVFHAR SVCNSWRSTF 1680 PFPSSLLRPS YSLPTFDEVT LESKELCTLE KVPLFLFRPR APTIAANSSL ASEYFLGGIG 1740 RDDHHLDLPS PLQCSVKVQI QGYDPALMNM VECQILPLGH QYRLIGWEPK GYRGVAFLPL 1800 NKEGRRGEFV VILNYTNVLL VLTSAEMKWK RLENVPAGSV CSDLGTFRGR FYASFLARST 1860 FIIDPYSLEV TLLMPSPPKP LNYLVASGDD ELFLVEVTIP MFEEIDFSRF TCRVSRLDEE 1920 CSKWVEVRDL GDRLLFIGHF GNVCCSGKEL PDGCGLSGNS IVFTNEPTFP YKYGVHTGTG 1980 EDDLDCWRTT RENRVMIFNT DPITNKLNFN YRRKKMSSMK PDWSQLPEEL LPLISKKLAA 2040 YCFDVVHARS VCRTWRSVFP FPSCLVRPSY SLPSFADFPI ESKDLCTLEK VPLFLFRLRA 2100 PVASAALPCE YTLGGIGRDD HHLELPSPLQ CTVKVKFRGS DPTLMKILDY QILPLGYQYR 2160 MIGWDPERWI RYYRGVAFLP LNKDGEFVVL LNYAKVLLVL ASVEMRWKRL TNVPNYQCTD 2220 LVTYRGRFYA VF* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa16g046430.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010472486.1 | 0.0 | PREDICTED: F-box/kelch-repeat protein At1g64840-like | ||||
| Refseq | XP_010472487.1 | 0.0 | PREDICTED: F-box/kelch-repeat protein At1g64840-like | ||||
| Swissprot | Q9XIR1 | 1e-139 | FBK27_ARATH; F-box/kelch-repeat protein At1g64840 | ||||
| TrEMBL | M4ETD7 | 0.0 | M4ETD7_BRARP; Uncharacterized protein | ||||
| TrEMBL | R0FWT3 | 0.0 | R0FWT3_9BRAS; Uncharacterized protein | ||||
| STRING | XP_010472486.1 | 0.0 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM486 | 2 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00260.1 | 1e-113 | B3 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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