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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g046370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 468aa MW: 52846 Da PI: 10.2419 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.9 | 5e-20 | 104 | 192 | 5 | 95 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++++l+ + l+lp +f++++g++k+ +++l+d +g+sWe++++y+k+ +r++ +GW++F+++ g k+g +++F+l++ + ++++++ Csa16g046370.1 104 FVTASNLEADTLYLPQDFTSSCGLPKNFC-KVVLTDGTGNSWELEMRYDKSCNRFYVNRGWRHFCDELGKKVGSVFTFELMK-KWGTPFLS 192 6789999999**************99875.9************************************************998.77777766 PP | |||||||
2 | B3 | 37.1 | 5.4e-12 | 213 | 306 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + ++ d+lk++rl+lp ++++g+++++ +tl ++g + +l r++ gr l+k W+eF+ an+L++g+ ++++ ++ +++++ + Csa16g046370.1 213 TLNLSYDSLKNCRLYLPSAIMRTYGLDETR--LVTLLAKDGTRTIANLVRetsRRNFGRLSLGKAWREFALANNLEVGENFTLECIW-ENATPIL 304 55667799*******************776..688888888766666644344777777*************************999.6776777 PP EE CS B3 95 kv 96 ++ Csa16g046370.1 305 RL 306 66 PP | |||||||
3 | B3 | 40.4 | 5.4e-13 | 373 | 456 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 k ++l+lp +f+e++g++ + +++l ++g sW +l k++g++ + GWk+F+k ng+k g ++ ++++++ + ++v++++ Csa16g046370.1 373 AKACMLYLPSHFMEANGIDR-IG-KIVLLGRKGsVSWCGYL--LKRDGAVNVGCGWKHFCKTNGVKIGGSFSLEFKHKVDNTPVLQFR 456 56799***********9884.55.67777766659******..*******************************99998888998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-19 | 97 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-19 | 97 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.25E-17 | 100 | 185 | No hit | No description |
PROSITE profile | PS50863 | 13.606 | 100 | 197 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.3E-22 | 101 | 197 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-18 | 104 | 193 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-11 | 211 | 310 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.024 | 211 | 310 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-11 | 211 | 307 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-10 | 212 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-11 | 214 | 304 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.40E-8 | 216 | 308 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-12 | 360 | 458 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.095 | 363 | 458 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-10 | 364 | 459 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-13 | 364 | 457 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.2E-11 | 374 | 457 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.05E-8 | 376 | 436 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
LKVIQTTTNF ISIFFAPTRF LQQNLFFSSP QAKMYGVSAC DVRQPPSARN IDLNKTVNTS 60 KKHQRPTEEG GDVQENAVLV RAKRGRKKKS IPEAGLDNSS FFAFVTASNL EADTLYLPQD 120 FTSSCGLPKN FCKVVLTDGT GNSWELEMRY DKSCNRFYVN RGWRHFCDEL GKKVGSVFTF 180 ELMKKWGTPF LSFSPSKATP CYETSEDLDN FMTLNLSYDS LKNCRLYLPS AIMRTYGLDE 240 TRLVTLLAKD GTRTIANLVR ETSRRNFGRL SLGKAWREFA LANNLEVGEN FTLECIWENA 300 TPILRLTDTK PRRYIKRGPK PKYSGFCKKM SVSTAAKDAK EREKGKNIEE PINAASLIEK 360 HRLVILPLLR KDAKACMLYL PSHFMEANGI DRIGKIVLLG RKGSVSWCGY LLKRDGAVNV 420 GCGWKHFCKT NGVKIGGSFS LEFKHKVDNT PVLQFRPKLR RGININV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g046370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010472481.1 | 0.0 | PREDICTED: B3 domain-containing protein REM-like 2 | ||||
TrEMBL | D7LIB9 | 1e-128 | D7LIB9_ARALL; Uncharacterized protein | ||||
STRING | XP_010472481.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7828 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24696.1 | 1e-108 | B3 family protein |