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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g046360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 381aa MW: 42754.3 Da PI: 8.2029 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 2.9e-19 | 38 | 127 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +++ +l+++ l+lp +f++++++k ++ +++l+d + rsW + l+++k sg++++++GWk+F+++ng ++g f++Fkl ++ +++++++ Csa16g046360.1 38 AHVTAASLETDALYLPQDFTSSNDLKRKC-CKIVLKDGEERSWAMDLRFNKLSGTCYISRGWKHFCDENGKNAGSFFTFKLLEN-GETPLLS 127 556788899999***********999655.6*************************************************9874.4445555 PP | |||||||
2 | B3 | 60.1 | 3.8e-19 | 160 | 252 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++d+lks+rl+lp +f++e+g++ +++++tl ++g +W +l r +sgr+ l+kG k+F +angLk g++++++l++ +++++v+ Csa16g046360.1 160 FVTLTLTNDNLKSSRLYLPLPFVRENGMN--NPRMVTLLGKDGIRWAANL-LRENSGRMSLGKGMKDFSRANGLKIGESFTLELIW-ENATPVLN 250 7788899*******************999..5669***************.799999*****************************.77778887 PP EE CS B3 96 vf 97 +f Csa16g046360.1 251 LF 252 76 PP | |||||||
3 | B3 | 65.6 | 7.2e-21 | 262 | 355 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++d+l+++rl lp +f++e++++k++ ++tl ++g +W +l + ++gr+ l+kGWkeF+kangL++g +++++ ++ ++++++++ Csa16g046360.1 262 FVTLTVTHDSLNNNRLGLPLSFMRENDMNKPG--KITLLGKDGTKWIANL-LQESRGRMSLGKGWKEFAKANGLEVGVSFTLESIW-EDTTPMLG 352 788899********************999766..7***************.7999999*************************999.88889999 PP EE- CS B3 96 vfr 98 +f+ Csa16g046360.1 353 LFS 355 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-18 | 30 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-19 | 34 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.09E-16 | 35 | 128 | No hit | No description |
SMART | SM01019 | 1.2E-20 | 35 | 132 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.634 | 35 | 132 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-18 | 38 | 125 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-19 | 151 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-19 | 157 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.31E-18 | 159 | 253 | No hit | No description |
SMART | SM01019 | 1.5E-27 | 160 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-19 | 160 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.803 | 160 | 255 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-18 | 256 | 350 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-20 | 259 | 351 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.47E-18 | 261 | 355 | No hit | No description |
SMART | SM01019 | 2.4E-27 | 262 | 357 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-20 | 262 | 355 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.677 | 262 | 357 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MMIEEASDHQ DNKIEFQRKK KVKQNNPETE ADSSCFVAHV TAASLETDAL YLPQDFTSSN 60 DLKRKCCKIV LKDGEERSWA MDLRFNKLSG TCYISRGWKH FCDENGKNAG SFFTFKLLEN 120 GETPLLSVWP TKSDNDRAQG DNNSSQSDRD STSPPNRNRF VTLTLTNDNL KSSRLYLPLP 180 FVRENGMNNP RMVTLLGKDG IRWAANLLRE NSGRMSLGKG MKDFSRANGL KIGESFTLEL 240 IWENATPVLN LFCKEVKIQN RFVTLTVTHD SLNNNRLGLP LSFMRENDMN KPGKITLLGK 300 DGTKWIANLL QESRGRMSLG KGWKEFAKAN GLEVGVSFTL ESIWEDTTPM LGLFSIESTS 360 DKRQQGECCS NASENSSIST * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g046360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019094011.1 | 0.0 | PREDICTED: B3 domain-containing protein REM12-like | ||||
Swissprot | P0CAP4 | 1e-109 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A1J3JLQ3 | 0.0 | A0A1J3JLQ3_NOCCA; B3 domain-containing protein REM12 | ||||
STRING | XP_010472480.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7828 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 1e-111 | B3 family protein |