PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa16g044600.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 228aa MW: 26129.5 Da PI: 7.6078

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g044600.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.8e-11	127	172	3	48
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 e+++ +r+++NRe+A+rsR RK+ ie+L++++ L eN++L ++ Csa16g044600.1 127 EDRKRKRMESNRESAKRSRMRKQRHIENLKDEANRLGLENRELGNR 172 68999***********************************999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-13	125	189	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.9E-10	126	173	No hit	No description
Pfam	PF00170	3.1E-9	127	173	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.99	127	173	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-10	129	176	No hit	No description
CDD	cd14702	3.53E-16	130	177	No hit	No description
PROSITE pattern	PS00036	0	132	147	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MMSTLPAFSF TEPGFVNQIS DLQTGFTPWE LDCFTDLFLS TINHEPAVLS PCTGESDTVK 60 INTGFNGFDE SCIGSIKTNS GSDDSDIFHG VPSPQSDELN SDNTRTRINA TGHNRMKLNR 120 PVLQVTEDRK RKRMESNRES AKRSRMRKQR HIENLKDEAN RLGLENRELG NRLRIVLYNI 180 GLISTDNDRL MSEQEILRRR FLEMRQILIL RQLQQNPSLI INHHQMI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	146	KRSRMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g044600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472282.1	1e-167	PREDICTED: basic leucine zipper 43
TrEMBL	D7LE49	1e-136	D7LE49_ARALL; BZIP transcription factor family protein
STRING	XP_010472282.1	1e-167	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7855	18	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22850.2	1e-128	basic leucine-zipper 6