PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g044040.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CAMTA

Protein Properties

Length: 1001aa MW: 112649 Da PI: 5.4474

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g044040.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.4	9.8e-52	20	131	3	113
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n++fqr Csa16g044040.1 20 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQR 114 4449***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvh 113 r+ywlL+ ++ + h Csa16g044040.1 115 RSYWLLQDFNQNDHSNH 131 *****9877766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	71.774	15	143	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.9E-70	18	170	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-43	21	122	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.1E-4	431	519	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.47E-17	433	518	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.03E-15	602	724	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.62E-11	609	721	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.2E-15	609	724	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.228	612	721	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.164	662	694	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.81E-8	816	870	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.92	819	841	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.974	821	847	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.004	822	840	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0054	842	864	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.432	843	867	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.5E-4	845	864	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL 120 QDFNQNDHSN HSQTTDSASV NGFHTPELED AESAYNQHGS SIVYSHQELQ QPATRGNLTD 180 FDPYYQVSLT PRDSYQKEFR TVPITHSSVM VDKSKTINSP GVTNGLRNKK SIDSQTWEEI 240 LGNCGSGAEG LPLQPNSEHE VLDQILQSSS FTMRDFASLQ ESMIKSGVYT FLILLLNFCI 300 PLAQFVLNQE LNLGVTSDHT VWFQGQDIEP NAIINLASNE KAPYLSTMKQ HLLDGALGEE 360 GLKKMDSFNR WMSKELGDVG VLADANESFT QSSSRTYWEE VESEDGSNGH NSRRDLDGYV 420 MSPSLSKEQL FSISDFSPSW AYVGCEVVVF VTGKFLKTRE EAEIGEWSCM FGQTEVPADV 480 IANGVLQCVA PMHEAGRVPF YVTCSNRLAC SEVREFEYKV AETQIFDRET DDESTIDILE 540 ARFVKLLCSK SESSSAVSGN DSDLSQVSEK ISLLLFENDD QLDQMLMNEI SQENMKKNLL 600 QEFLKESLHS WLLQKIAEGG KGPSVLDEGG QGVLHFAASL GYNWALEPTI LAGVSVDFRD 660 VNGWTALHWA AFFGRERIIG SLIALGAAPG TLTDPNPDFP SGSTPSDLAY ANGHKGIAGY 720 LSEYALRAHV SLLSLNDNNA ETVETAPSPS SSSLTDSLTA VRNATQAAAR IHQVFRAQSF 780 QKKQLKEFGD RKLRMSEERA LSMLAPKTHK SGRAHSDDSV QAAAIRIQNK FRGYKGRKDY 840 LITRQRIIRI QAHVRGYQVR KNYRKIIWSV GILEKVILRW RRKGAGLRGF KSDALVDNRM 900 QDETEKEEDD DFFKQGRKQT EERLQKALAR VKSMVQYPEA RDQYRRLLNV VNDIQESKVE 960 KALENSEGAT CFDDDLIDIE ALLGDDDTLM LPMSSSLWTN *

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL  120
QDFNQNDHSN HSQTTDSASV NGFHTPELED AESAYNQHGS SIVYSHQELQ QPATRGNLTD  180
FDPYYQVSLT PRDSYQKEFR TVPITHSSVM VDKSKTINSP GVTNGLRNKK SIDSQTWEEI  240
LGNCGSGAEG LPLQPNSEHE VLDQILQSSS FTMRDFASLQ ESMIKSGVYT FLILLLNFCI  300
PLAQFVLNQE LNLGVTSDHT VWFQGQDIEP NAIINLASNE KAPYLSTMKQ HLLDGALGEE  360
GLKKMDSFNR WMSKELGDVG VLADANESFT QSSSRTYWEE VESEDGSNGH NSRRDLDGYV  420
MSPSLSKEQL FSISDFSPSW AYVGCEVVVF VTGKFLKTRE EAEIGEWSCM FGQTEVPADV  480
IANGVLQCVA PMHEAGRVPF YVTCSNRLAC SEVREFEYKV AETQIFDRET DDESTIDILE  540
ARFVKLLCSK SESSSAVSGN DSDLSQVSEK ISLLLFENDD QLDQMLMNEI SQENMKKNLL  600
QEFLKESLHS WLLQKIAEGG KGPSVLDEGG QGVLHFAASL GYNWALEPTI LAGVSVDFRD  660
VNGWTALHWA AFFGRERIIG SLIALGAAPG TLTDPNPDFP SGSTPSDLAY ANGHKGIAGY  720
LSEYALRAHV SLLSLNDNNA ETVETAPSPS SSSLTDSLTA VRNATQAAAR IHQVFRAQSF  780
QKKQLKEFGD RKLRMSEERA LSMLAPKTHK SGRAHSDDSV QAAAIRIQNK FRGYKGRKDY  840
LITRQRIIRI QAHVRGYQVR KNYRKIIWSV GILEKVILRW RRKGAGLRGF KSDALVDNRM  900
QDETEKEEDD DFFKQGRKQT EERLQKALAR VKSMVQYPEA RDQYRRLLNV VNDIQESKVE  960
KALENSEGAT CFDDDLIDIE ALLGDDDTLM LPMSSSLWTN *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g044040.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF506697	0.0	AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBank	AY510025	0.0	AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBank	BT002459	0.0	BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472220.1	0.0	PREDICTED: calmodulin-binding transcription activator 3
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	R0HWU6	0.0	R0HWU6_9BRAS; Uncharacterized protein
STRING	XP_010472220.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8601	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]