PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g044040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CAMTA | ||||||||
Protein Properties | Length: 1001aa MW: 112649 Da PI: 5.4474 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 165.4 | 9.8e-52 | 20 | 131 | 3 | 113 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n++fqr Csa16g044040.1 20 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQR 114 4449******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvh 113 r+ywlL+ ++ + h Csa16g044040.1 115 RSYWLLQDFNQNDHSNH 131 *******9877766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 71.774 | 15 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.9E-70 | 18 | 170 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.3E-43 | 21 | 122 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 3.1E-4 | 431 | 519 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 7.47E-17 | 433 | 518 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 1.03E-15 | 602 | 724 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.62E-11 | 609 | 721 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.2E-15 | 609 | 724 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.228 | 612 | 721 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.164 | 662 | 694 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.81E-8 | 816 | 870 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.92 | 819 | 841 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.974 | 821 | 847 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.004 | 822 | 840 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0054 | 842 | 864 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.432 | 843 | 867 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.5E-4 | 845 | 864 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1001 aa Download sequence Send to blast |
MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL 120 QDFNQNDHSN HSQTTDSASV NGFHTPELED AESAYNQHGS SIVYSHQELQ QPATRGNLTD 180 FDPYYQVSLT PRDSYQKEFR TVPITHSSVM VDKSKTINSP GVTNGLRNKK SIDSQTWEEI 240 LGNCGSGAEG LPLQPNSEHE VLDQILQSSS FTMRDFASLQ ESMIKSGVYT FLILLLNFCI 300 PLAQFVLNQE LNLGVTSDHT VWFQGQDIEP NAIINLASNE KAPYLSTMKQ HLLDGALGEE 360 GLKKMDSFNR WMSKELGDVG VLADANESFT QSSSRTYWEE VESEDGSNGH NSRRDLDGYV 420 MSPSLSKEQL FSISDFSPSW AYVGCEVVVF VTGKFLKTRE EAEIGEWSCM FGQTEVPADV 480 IANGVLQCVA PMHEAGRVPF YVTCSNRLAC SEVREFEYKV AETQIFDRET DDESTIDILE 540 ARFVKLLCSK SESSSAVSGN DSDLSQVSEK ISLLLFENDD QLDQMLMNEI SQENMKKNLL 600 QEFLKESLHS WLLQKIAEGG KGPSVLDEGG QGVLHFAASL GYNWALEPTI LAGVSVDFRD 660 VNGWTALHWA AFFGRERIIG SLIALGAAPG TLTDPNPDFP SGSTPSDLAY ANGHKGIAGY 720 LSEYALRAHV SLLSLNDNNA ETVETAPSPS SSSLTDSLTA VRNATQAAAR IHQVFRAQSF 780 QKKQLKEFGD RKLRMSEERA LSMLAPKTHK SGRAHSDDSV QAAAIRIQNK FRGYKGRKDY 840 LITRQRIIRI QAHVRGYQVR KNYRKIIWSV GILEKVILRW RRKGAGLRGF KSDALVDNRM 900 QDETEKEEDD DFFKQGRKQT EERLQKALAR VKSMVQYPEA RDQYRRLLNV VNDIQESKVE 960 KALENSEGAT CFDDDLIDIE ALLGDDDTLM LPMSSSLWTN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g044040.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF506697 | 0.0 | AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds. | |||
GenBank | AY510025 | 0.0 | AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds. | |||
GenBank | BT002459 | 0.0 | BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010472220.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 3 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | R0HWU6 | 0.0 | R0HWU6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010472220.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8601 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |