PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g041060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 381aa    MW: 42311.4 Da    PI: 9.6977
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g041060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.68.4e-2967151187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km e g+ r++k+Ckek+en+ k++k++keg+ +++  + +t+++fdqlea
  Csa16g041060.1  67 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMGELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKS--DGKTYRFFDQLEA 151
                     8********************************************************************964..5557*******85 PP
2trihelix31.54.5e-10337376140
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmre 40 
                     rW+k e+ aLi++r++++++++++  k+plWee+s+ mr+
  Csa16g041060.1 337 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRS 376
                     8*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.95766124IPR017877Myb-like domain
PfamPF138371.8E-1766152No hitNo description
CDDcd122033.91E-2266131No hitNo description
PROSITE profilePS500904.124330380IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MQLGGGTPST TTTTAAASTA TPPPPPPPPQ PQPQSNDSAA TEAAAAAAVG AFEVSEEMND  60
RGFGGNRWPR QETLALLKIR SDMGIAFRDA SVKGPLWEEV SRKMGELGYI RNAKKCKEKF  120
ENVYKYHKRT KEGRTGKSDG KTYRFFDQLE ALETHHHHHH QPLRPHQHQH QNNNSIFSTP  180
PPITTVMPPS DLQRKFLEAV EKREHERLVR EDSWRVQEIA RINRDQEILA QERSMSAAKD  240
AAVMAFLQKL SEKQPNQPPT TTVQPQQQVR PPQMQLLNNN NNQQQTPQPS PPAPPPLLQP  300
IQAVLPSSSE TRKTDNGDQS MMTPASASAS GSASSSRWPK VEIEALIKLR TNLDSKYQEN  360
GPKGPLWEEI SAGMRSIKEN *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g041060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2301521e-102AK230152.1 Arabidopsis thaliana mRNA for hypothetical protein, partial sequence., clone: RAFL22-85-G13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648722.11e-103trihelix transcription factor GT-2-like
RefseqXP_022544702.11e-103trihelix transcription factor GT-2-like
SwissprotQ391172e-46TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A078ICF31e-131A0A078ICF3_BRANA; BnaC06g18750D protein
STRINGBra003703.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-70Trihelix family protein