PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g040450.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 736aa MW: 85241.4 Da PI: 7.0938

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g040450.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.1	9.3e-26	12	97	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ dgkw+v+++++eHnH+l p Csa16g040450.1 12 YYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRPSPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLP 97 8**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-23	12	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-26	220	312	IPR018289	MULE transposase domain
Pfam	PF04434	2.6E-9	498	532	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.546	498	534	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	509	536	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MEFETHEDAY LYYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RPSPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHDLLPEQA HFFRSHRNNN NNNTEPVKSN 120 DAQRFRRKKN SPLADCKHLS AYNDLDFING YMRNQHDKGR RLVLDDGGGD AQILLEFLMR 180 MQEENPKFFF AVDFSEDHLL RNVFWVDAKG IEDYKSFSDV VSFDTTYFVS KYKVPLVLFI 240 GVNHHVQPVL LGCGLVADDT VYTYVWLMQS WLVAMGGQKP KVMLTDQNNA IKAAVAAVLM 300 ETRHCYCLWH VLEQLPRNLD YWSMWQDTFM KKLFKCIYKS WSEEEFDRRW LKLIDKFHLR 360 DVQWMRSLYD ERKFWAPTFM RGVTFAGLST RYRSESVNSL FDRYVHIETS LKEFLEGYGV 420 MLEDRYEEEA KADFDAWHEA PELKSPSPFE KQMLLVYTHE IFRKFQLEVL GAAACHLTKE 480 SEEGTTYSVK DFDDDQKYLV DWDEFKSDIY CSCRSFEYKG YLCRHAIVVL QMSGVFTIPI 540 NYVLQRWTNA ARNRHQISGN LELVQTNIRR FNDLCRRAII LGEEGSLSQE SYDIAMLAMK 600 EAFKQCAIKF NTMEHPEAAI QAGDSVQEGN QYGSTMTQIG LEPNLHASNA PVQAETRREK 660 RSSLNNTSKN SKHMAQSETV GEGSQEAFQH VAAPRSLQAV AGQFHNTMPG IFQNVIPTEF 720 HNLPATNMHQ NNPPG*

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MEFETHEDAY LYYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RPSPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHDLLPEQA HFFRSHRNNN NNNTEPVKSN  120
DAQRFRRKKN SPLADCKHLS AYNDLDFING YMRNQHDKGR RLVLDDGGGD AQILLEFLMR  180
MQEENPKFFF AVDFSEDHLL RNVFWVDAKG IEDYKSFSDV VSFDTTYFVS KYKVPLVLFI  240
GVNHHVQPVL LGCGLVADDT VYTYVWLMQS WLVAMGGQKP KVMLTDQNNA IKAAVAAVLM  300
ETRHCYCLWH VLEQLPRNLD YWSMWQDTFM KKLFKCIYKS WSEEEFDRRW LKLIDKFHLR  360
DVQWMRSLYD ERKFWAPTFM RGVTFAGLST RYRSESVNSL FDRYVHIETS LKEFLEGYGV  420
MLEDRYEEEA KADFDAWHEA PELKSPSPFE KQMLLVYTHE IFRKFQLEVL GAAACHLTKE  480
SEEGTTYSVK DFDDDQKYLV DWDEFKSDIY CSCRSFEYKG YLCRHAIVVL QMSGVFTIPI  540
NYVLQRWTNA ARNRHQISGN LELVQTNIRR FNDLCRRAII LGEEGSLSQE SYDIAMLAMK  600
EAFKQCAIKF NTMEHPEAAI QAGDSVQEGN QYGSTMTQIG LEPNLHASNA PVQAETRREK  660
RSSLNNTSKN SKHMAQSETV GEGSQEAFQH VAAPRSLQAV AGQFHNTMPG IFQNVIPTEF  720
HNLPATNMHQ NNPPG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g040450.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221406	0.0	AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06.
GenBank	BT010456	0.0	BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010471782.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4, partial
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A178WNR6	0.0	A0A178WNR6_ARATH; FRS4
STRING	XP_010471782.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]