 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa16g039470.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
SRS |
| Protein Properties |
Length: 350aa MW: 38812.1 Da PI: 6.9243 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa16g039470.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 224.7 | 1.8e-69 | 122 | 288 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsa 85
r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakr+er +ql ++++++++s++++++kr re + sa
Csa16g039470.1 122 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRQERLAQLDSLQHHSTSSRETQNTKRLREAsggdnsdgkdhSGGGGSA 216
7899*************************************************************999999998888888888877766777899 PP
DUF702 86 lsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
l++t++++a+s++ le+s+ lP+ev+s+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG+++
Csa16g039470.1 217 LATTRVVNANSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 288
**************998876*******************98535567***********************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MAGFFYLGGR DNNNNNNNNN NNKQDHHQVD KDHHHQDKSN YLYLYKDEIY NNNKGFEIWP 60
PQYFQQQEQP QQQQQHASAP ANFYSFGMVP SGSSSNNNNN RSRSLYFNVV SDHEPGGFTV 120
TRQGGMNCQD CGNQAKKDCP HMRCRTCCKS RGFHCQTHVK STWVPAAKRQ ERLAQLDSLQ 180
HHSTSSRETQ NTKRLREASG GDNSDGKDHS GGGGSALATT RVVNANSNSG LEVSQHLPPE 240
VNSPAVFRCV RVSSIEEDED DQEYAYQTAV NIGGHVFKGI LYDQGPDQDH HHHLNLLAST 300
ATTTNVEETA TKAVAGNNNN GLMLDPSSLY PAQLNSFIAG TPFFTPPRS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY800620 | 0.0 | AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds. |
| GenBank | AY924730 | 0.0 | AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds. |
