PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g039240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 448aa    MW: 49411.6 Da    PI: 10.0535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g039240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.7e-11326327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     elCr+f+r G C++G++C+F H++
  Csa16g039240.1  3 KELCRNFQR-GSCRFGENCRFLHPQ 26
                    69*******.*************97 PP
2zf-CCCH18.43.9e-061381511427
                     --TTTTT-SS-SSS CS
         zf-CCCH  14 tCkyGdrCkFaHgp 27 
                     +C++G++C+F H++
  Csa16g039240.1 138 YCRFGENCRFLHPQ 151
                     9***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.15127IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-8126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-8326IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9326IPR000571Zinc finger, CCCH-type
SMARTSM003565.5127151IPR000571Zinc finger, CCCH-type
PfamPF146080.035135150No hitNo description
PROSITE profilePS501038.934138152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MRKELCRNFQ RGSCRFGENC RFLHPQQAKP NNPFGFGSQQ QPQQQQQQKS SNPFGFGVQS  60
GGASSRPNQF QPFENTWSRT GSTPNAAAGA SAQQTGGKQT QSADHKCTDP AACKRVMQDD  120
FKNERPMWKL TCYGHWKYCR FGENCRFLHP QQAKPNNPFG FGSQQQPQQQ QQQKSSNPFG  180
FGVQSGGASS RPNQFQPFEN TWSRTGSTPN AAAGASAQQT GGKQTQSADH KCTDPAACKR  240
VMQDDFKNER PMWKLTCYGH WKYFPCDVTG DISYEELRAL AYDEAKRGIP LQSIVERERN  300
LQNSKIAEFE SFLRNPYKGS VTANQSPFAA PTPNIFPPTN QINSSPPAFS GFNQQPAFPN  360
TNAGGLSSSG PLNAFASFSH QSNNQQTTFP NTNAGGVSSS GPPNLFASFN QQSNNQQAAF  420
PNINAGGVRY KVLWAFSIFK FRKVVLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g039240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019093353.10.0PREDICTED: zinc finger CCCH domain-containing protein 16-like
SwissprotQ9FWS31e-158C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLD7KSN01e-165D7KSN0_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010474347.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-137C3H family protein