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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g038730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 28309.5 Da PI: 7.5733 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 5.9e-14 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+Wk I++ + k Rt q+ s+ qky Csa16g038730.1 97 PWTEEEHKLFLVGLQRVGKGDWKGISKNFVKSRTSTQVASHAQKY 141 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-11 | 88 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.305 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.84E-17 | 92 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.6E-17 | 93 | 144 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.1E-9 | 94 | 144 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-11 | 97 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-8 | 97 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MTDGSTTSSS ESTNVCGGVV RREIMLFGFR VVLDPMRKCV SLNNLSEYEQ TDESPKIDGE 60 DRDGQDKNKT PAGYASADEA VPMSSSNAKS ERKRGVPWTE EEHKLFLVGL QRVGKGDWKG 120 ISKNFVKSRT STQVASHAQK YFLRRSNINR RRRRSSLFDM TTDTVMPMED DQVVMQENTS 180 QSSSVIPEIN NFSIHPVMQV YPEINNISGG NASGNQPYGQ FGSSRPAPLS LNLSLASSNL 240 NEPSSSMHSA FNTIGVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g038730.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318855 | 0.0 | AK318855.1 Arabidopsis thaliana AT1G74840 mRNA, complete cds, clone: RAFL16-10-L11. | |||
GenBank | AY070098 | 0.0 | AY070098.1 Arabidopsis thaliana putative myb-related transcription activator protein (At1g74840) mRNA, complete cds. | |||
GenBank | AY096393 | 0.0 | AY096393.1 Arabidopsis thaliana putative myb-related transcription activator (At1g74840) mRNA, complete cds. | |||
GenBank | AY519510 | 0.0 | AY519510.1 Arabidopsis thaliana MYB transcription factor (At1g74840) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471576.1 | 0.0 | PREDICTED: transcription factor MYB1R1 | ||||
Swissprot | Q2V9B0 | 9e-52 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | R0IBE6 | 1e-141 | R0IBE6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010471576.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2461 | 26 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74840.2 | 1e-112 | MYB_related family protein |
Publications ? help Back to Top | |||
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