PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

AP2

Protein Properties

Length: 409aa MW: 46196.9 Da PI: 6.3436

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g037880.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	26.7	1.4e-08	236	289	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ ++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Csa16g037880.1 236 SQYRGVTRHRW---FEAHLWDnSCKkEGqTRKGRQ-GGYDEEEKAARAYDLAALKYWG 289 78**97775...66*77776664446655.779999************98 PP
2	AP2	36.4	1.3e-11	321	366	7	55
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Csa16g037880.1 321 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 366 8999******988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.42E-11	236	299	IPR016177	DNA-binding domain
CDD	cd00018	2.18E-17	236	296	No hit	No description
SMART	SM00380	1.1E-17	237	303	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-5	237	289	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.552	237	297	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.5E-10	237	298	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-6	238	249	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.608	315	374	IPR001471	AP2/ERF domain
SMART	SM00380	2.2E-26	321	380	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-6	321	366	IPR001471	AP2/ERF domain
CDD	cd00018	1.65E-21	321	376	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.9E-15	322	374	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-15	322	375	IPR016177	DNA-binding domain
PRINTS	PR00367	3.9E-6	356	376	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MNKCLGFSLT PHLRTCDREE EEEEKGEEEL RHNGSDGSLL FADPLTHHPS VGRYDINLDH 60 HHHHDEEVPN SHQTEYPMNH NQTNINCTTV INGLYPPGYL LHEQTVVTPQ YPNLIPDYGA 120 FERVGSVSDF KYWSTQGTPT FPLSNTYVNE EGGTSNTISH LSNEETGYYN TNGSMLSLAL 180 SHGACSDLIN ESNVLSVPVE EPVKVDEKRK RLDGKSQVVK ESVPRKSVNN LGQRTSQYRG 240 VTRHRWFEAH LWDNSCKKEG QTRKGRQGGY DEEEKAARAY DLAALKYWGP TTHLNFSLSN 300 YEKEIEELDN MNRQEFVAML RRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA 360 AIKFRGLNAV TNFDINRYDV KRICSASCSA IANSDQAKGS PTGQQRPP*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MNKCLGFSLT PHLRTCDREE EEEEKGEEEL RHNGSDGSLL FADPLTHHPS VGRYDINLDH  60
HHHHDEEVPN SHQTEYPMNH NQTNINCTTV INGLYPPGYL LHEQTVVTPQ YPNLIPDYGA  120
FERVGSVSDF KYWSTQGTPT FPLSNTYVNE EGGTSNTISH LSNEETGYYN TNGSMLSLAL  180
SHGACSDLIN ESNVLSVPVE EPVKVDEKRK RLDGKSQVVK ESVPRKSVNN LGQRTSQYRG  240
VTRHRWFEAH LWDNSCKKEG QTRKGRQGGY DEEEKAARAY DLAALKYWGP TTHLNFSLSN  300
YEKEIEELDN MNRQEFVAML RRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA  360
AIKFRGLNAV TNFDINRYDV KRICSASCSA IANSDQAKGS PTGQQRPP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g037880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446422	0.0	DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds.
GenBank	DQ652930	0.0	DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010471480.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q1PFE1	0.0	AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBL	D7KR17	0.0	D7KR17_ARALL; Uncharacterized protein
STRING	XP_010471480.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11747	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	0.0	AP2 family protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711]