PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g037880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 409aa    MW: 46196.9 Da    PI: 6.3436
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g037880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.71.4e-08236289155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+++++   ++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Csa16g037880.1 236 SQYRGVTRHRW---FEAHLWDnSCKkEGqTRKGRQ-GGYDEEEKAARAYDLAALKYWG 289
                     78****97775...66*****77776664446655.779999**************98 PP
2AP236.41.3e-11321366755
             AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Csa16g037880.1 321 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 366
                     8999********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-11236299IPR016177DNA-binding domain
CDDcd000182.18E-17236296No hitNo description
SMARTSM003801.1E-17237303IPR001471AP2/ERF domain
PfamPF008471.2E-5237289IPR001471AP2/ERF domain
PROSITE profilePS5103214.552237297IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-10237298IPR001471AP2/ERF domain
PRINTSPR003673.9E-6238249IPR001471AP2/ERF domain
PROSITE profilePS5103216.608315374IPR001471AP2/ERF domain
SMARTSM003802.2E-26321380IPR001471AP2/ERF domain
PfamPF008471.4E-6321366IPR001471AP2/ERF domain
CDDcd000181.65E-21321376No hitNo description
Gene3DG3DSA:3.30.730.102.9E-15322374IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15322375IPR016177DNA-binding domain
PRINTSPR003673.9E-6356376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MNKCLGFSLT PHLRTCDREE EEEEKGEEEL RHNGSDGSLL FADPLTHHPS VGRYDINLDH  60
HHHHDEEVPN SHQTEYPMNH NQTNINCTTV INGLYPPGYL LHEQTVVTPQ YPNLIPDYGA  120
FERVGSVSDF KYWSTQGTPT FPLSNTYVNE EGGTSNTISH LSNEETGYYN TNGSMLSLAL  180
SHGACSDLIN ESNVLSVPVE EPVKVDEKRK RLDGKSQVVK ESVPRKSVNN LGQRTSQYRG  240
VTRHRWFEAH LWDNSCKKEG QTRKGRQGGY DEEEKAARAY DLAALKYWGP TTHLNFSLSN  300
YEKEIEELDN MNRQEFVAML RRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA  360
AIKFRGLNAV TNFDINRYDV KRICSASCSA IANSDQAKGS PTGQQRPP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g037880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464220.0DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds.
GenBankDQ6529300.0DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471480.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLD7KR170.0D7KR17_ARALL; Uncharacterized protein
STRINGXP_010471480.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]