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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g035670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 24791.2 Da PI: 7.692 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.6 | 1.2e-39 | 13 | 113 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC+k+C+lapyfp+++pk+f n+hklFG+sn++k++k ++e++r++am+ l+y+A+ara dP+ G ++v+ +l++++e+ +ael+ Csa16g035670.1 13 ACAACKYQRKKCTKNCILAPYFPQDRPKQFLNAHKLFGVSNITKMIKGVEESQRDIAMQNLIYHANARALDPIGGLYRVMCDLKRKIECCQAELN 107 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++ Csa16g035670.1 108 FTHQQI 113 **9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.35 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-36 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSFSAHSGGS TIACAACKYQ RKKCTKNCIL APYFPQDRPK QFLNAHKLFG VSNITKMIKG 60 VEESQRDIAM QNLIYHANAR ALDPIGGLYR VMCDLKRKIE CCQAELNFTH QQIAMCRSLA 120 HQQEQRQRQD LPFGCYSYGE LLQQEDEYVN VDGYGFQNVQ QHQEMQQQES PINYEMLLKM 180 PEQTSKVKLE ERTTISDQEQ NNLLRQILMS SSPIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-26 | 9 | 113 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-26 | 9 | 113 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g035670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471345.1 | 1e-161 | PREDICTED: LOB domain-containing protein 7 | ||||
Swissprot | Q9SSM9 | 2e-97 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | A0A087HHY6 | 1e-100 | A0A087HHY6_ARAAL; Uncharacterized protein | ||||
STRING | XP_010471345.1 | 1e-160 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15466 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 3e-99 | LOB domain-containing protein 7 |