PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g035260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 423aa    MW: 47618.5 Da    PI: 7.0731
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g035260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-12231287155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Csa16g035260.1 231 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDEEEKAARAYDLAALKYWG 287
                     78*******************77776664446655.779999**************98 PP
2AP248.52.2e-15330381155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Csa16g035260.1 330 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 381
                     78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-15231297IPR016177DNA-binding domain
CDDcd000182.40E-18231294No hitNo description
PfamPF008472.2E-9231287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-12232296IPR001471AP2/ERF domain
SMARTSM003801.5E-22232301IPR001471AP2/ERF domain
PROSITE profilePS5103217.082232295IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16330390IPR016177DNA-binding domain
PfamPF008473.2E-10330381IPR001471AP2/ERF domain
CDDcd000188.94E-23330387No hitNo description
Gene3DG3DSA:3.30.730.106.4E-17331388IPR001471AP2/ERF domain
SMARTSM003804.1E-30331395IPR001471AP2/ERF domain
PROSITE profilePS5103218.386331389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSKWLGFSVT PHLRTCDREE EEKDEEELRH NGSDGSLFFA DPLTHHPCVG RYDINLDHHH  60
HHDVEVPNSH QTEYPMNHNQ TNINCTHGLY PPGYLLHEQT VVTPRYPNLI PDYGAFERVG  120
SVSDFKSWSR QGTPTFPLSS TYVTEEGGTS NTISQLSNEE TGYYNTNGSM LSLALSHGAC  180
SDLINESNLL SVPVEEPVKV DEKRKRLDGK SQVVKESVPR KSVNSLGQRT SQYRGVTRHR  240
WTGRYEAHLW DNSCKKEGQT RKGRQGGYDE EEKAARAYDL AALKYWGPTT HLNFSLSNYE  300
KEIEELDNMN RQEFVAMLRR NSSGFSRGAS VYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  360
TFSTQEEAAE AYDIAAIKFR GLNAVTNVDI NRYAVKRICS ASSAIANSDQ AKGSPSGQER  420
PP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g035260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464220.0DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds.
GenBankDQ6529300.0DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471284.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A178WFN20.0A0A178WFN2_ARATH; Uncharacterized protein
TrEMBLD7KR170.0D7KR17_ARALL; Uncharacterized protein
STRINGXP_010471284.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]